Gram-negative bacteria possess a complex structural cell envelope that constitutes a barrier for antimicrobial peptides that neutralize the microbes by disrupting their cell membranes. Computational and experimental approaches were used to study a model outer membrane interaction with an antimicrobial peptide, melittin. The investigated membrane included di[3-deoxy-d-manno-octulosonyl]-lipid A (KLA) in the outer leaflet and 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine (POPE) in the inner leaflet. Molecular dynamics simulations revealed that the positively charged helical C-terminus of melittin anchors rapidly into the hydrophilic headgroup region of KLA, while the flexible N-terminus makes contacts with the phosphate groups of KLA, supporting melittin penetration into the boundary between the hydrophilic and hydrophobic regions of the lipids. Electrochemical techniques confirmed the binding of melittin to the model membrane. To probe the peptide conformation and orientation during interaction with the membrane, polarization modulation infrared reflection absorption spectroscopy was used. The measurements revealed conformational changes in the peptide, accompanied by reorientation and translocation of the peptide at the membrane surface. The study suggests that melittin insertion into the outer membrane affects its permeability and capacitance but does not disturb the membrane's bilayer structure, indicating a distinct mechanism of the peptide action on the outer membrane of Gram-negative bacteria.
This roadmap reviews the new, highly interdisciplinary research field studying the behavior of condensed matter systems exposed to radiation. The Review highlights several recent advances in the field and provides a roadmap for the development of the field over the next decade. Condensed matter systems exposed to radiation can be inorganic, organic, or biological, finite or infinite, composed of different molecular species or materials, exist in different phases, and operate under different thermodynamic conditions. Many of the key phenomena related to the behavior of irradiated systems are very similar and can be understood based on the same fundamental theoretical principles and computational approaches. The multiscale nature of such phenomena requires the quantitative description of the radiation-induced effects occurring at different spatial and temporal scales, ranging from the atomic to the macroscopic, and the interlinks between such descriptions. The multiscale nature of the effects and the similarity of their manifestation in systems of different origins necessarily bring together different disciplines, such as physics, chemistry, biology, materials science, nanoscience, and biomedical research, demonstrating the numerous interlinks and commonalities between them. This research field is highly relevant to many novel and emerging technologies and medical applications.
2 December 2022 in Journal of the American Chemical Society
This short review reports the surprising phenomenon of nuclear hyperpolarization occurring in chemical reactions, which is called CIDNP (chemically induced dynamic nuclear polarization) or photo-CIDNP if the chemical reaction is light-driven. The phenomenon occurs in both liquid and solid-state, and electron transfer systems, often carrying flavins as electron acceptors, are involved. Here, we explain the physical and chemical properties of flavins, their occurrence in spin-correlated radical pairs (SCRP) and the possible involvement of flavin-carrying SCRPs in animal magneto-reception at earth’s magnetic field.
The widespread use of radiofrequency (RF) communication has increased the exposure of organisms to electromagnetic fields, sparking a debate over the potential health effects of weak RF electromagnetic fields. While some experimental studies suggest that low-amplitude RF radiation may influence cellular metabolism or sleep patterns or even promote cancer, these claims remain controversial due to limited theoretical plausibility. Central to this debate is the radical pair mechanism (RPM), a quantum-mechanical framework proposed to mediate RF effects. Despite its role in magnetoreception and various magnetic field effects on chemical reactions, the RPM often fails to align with observations at low, nonthermal RF field strengths. This review examines these contrasting perspectives by discussing experimental findings and theoretical models that aim to explain putative biological effects of RF magnetic fields. Emphasis is placed on the challenges of reconciling theoretical predictions with empirical data, particularly in the context of weak RF exposure. Additionally, an overview of the theoretical framework used in current modeling efforts highlights the complexity of applying the RPM to biological systems and underscores the importance of critical interpretation. The goal is to clarify the state of understanding and inform future research on RPM-mediated biological effects under weak RF exposure.
26 April 2023 in Journal of Computational Chemistry
Spin relaxation is an important aspect of the spin dynamics of free radicals and can have a significant impact on the outcome of their spin‐selective reactions. Examples range from the use of radicals as spin qubits in quantum information processing to the radical pair reactions in proteins that may allow migratory birds to sense the direction of the Earth's magnetic field. Accurate modeling of spin relaxation, however, is non‐trivial. Bloch–Redfield–Wangsness theory derives a quantum mechanical master equation from system‐bath interactions in the Markovian limit that provides a comprehensive framework for describing spin relaxation. Unfortunately, the construction of the master equation is system‐specific and often resource‐heavy. To address this challenge, we introduce a generalized and efficient implementation of BRW theory as a new feature of the spin dynamics toolkit MolSpin which offers an easy‐to‐use approach for studying systems of reacting radicals of varying complexity.