Alain Borczuk

Alain Borczuk


Research Focus & Metrics

Academic Career Length

20Years (2007-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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16 April 2020 in Journal of Experimental Medicine
Verified
Journal Article
Open access
PDF file
BBBetsy J Barnes
Betsy J Barnes
JAJose M. Adrover
Jose M. Adrover
ABAmelia Baxter-Stoltzfus
Amelia Baxter-Stoltzfus
ABAlain Borczuk
Alain Borczuk
JCJonathan Cools-Lartigue
Jonathan Cools-Lartigue
MEMikala Egeblad
Mikala Egeblad
Coronavirus disease 2019 (COVID-19) is a novel, viral-induced respiratory disease that in ∼10–15% of patients progresses to acute respiratory distress syndrome (ARDS) triggered by a cytokine storm. In this Perspective, autopsy results and literature are presented supporting the hypothesis that a little known yet powerful function of neutrophils—the ability to form neutrophil extracellular traps (NETs)—may contribute to organ damage and mortality in COVID-19. We show lung infiltration of neutrophils in an autopsy specimen from a patient who succumbed to COVID-19. We discuss prior reports linking aberrant NET formation to pulmonary diseases, thrombosis, mucous secretions in the airways, and cytokine production. If our hypothesis is correct, targeting NETs directly and/or indirectly with existing drugs may reduce the clinical severity of COVID-19.

2 September 2020 in Laboratory Investigation
Verified
Journal Article
Closed access
PDF file
ABAlain Borczuk
Alain Borczuk
SSSteven P. Salvatore
Steven P. Salvatore
SSSurya V. Seshan
Surya V. Seshan
SPSanjay Patel
Sanjay Patel
JBJames B. Bussel
James B. Bussel
MBMary Beth Beasley
Mary Beth Beasley

29 March 2021 in Nature
Verified
Journal Article
Closed access
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ARAndré F. Rendeiro
André F. Rendeiro
HRHiranmayi Ravichandran
Hiranmayi Ravichandran
YBYaron Bram
Yaron Bram
VCVasuretha Chandar
Vasuretha Chandar
JKJunbum Kim
Junbum Kim
RSRobert E. Schwartz
Robert E. Schwartz

12 March 2021 in Nature Communications
Verified
Journal Article
Open access
PDF file
DBDaniel Butler
Daniel Butler
CMChristopher Mozsary
Christopher Mozsary
CMCem Meydan
Cem Meydan
JFJonathan Foox
Jonathan Foox
JRJoel Rosiene
Joel Rosiene
Christopher MasonChristopher Mason
Christopher Mason
In less than nine months, the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) killed over a million people, including >25,000 in New York City (NYC) alone. The COVID-19 pandemic caused by SARS-CoV-2 highlights clinical needs to detect infection, track strain evolution, and identify biomarkers of disease course. To address these challenges, we designed a fast (30-minute) colorimetric test (LAMP) for SARS-CoV-2 infection from naso/oropharyngeal swabs and a large-scale shotgun metatranscriptomics platform (total-RNA-seq) for host, viral, and microbial profiling. We applied these methods to clinical specimens gathered from 669 patients in New York City during the first two months of the outbreak, yielding a broad molecular portrait of the emerging COVID-19 disease. We find significant enrichment of a NYC-distinctive clade of the virus (20C), as well as host responses in interferon, ACE, hematological, and olfaction pathways. In addition, we use 50,821 patient records to find that renin–angiotensin–aldosterone system inhibitors have a protective effect for severe COVID-19 outcomes, unlike similar drugs. Finally, spatial transcriptomic data from COVID-19 patient autopsy tissues reveal distinctACE2expression loci, with macrophage and neutrophil infiltration in the lungs. These findings can inform public health and may help develop and drive SARS-CoV-2 diagnostic, prevention, and treatment strategies.

15 April 2016 in Archives of Pathology & Laboratory Medicine
Verified
Journal Article
Open access
Sinchita Roy-ChowdhuriSinchita Roy-Chowdhuri
Sinchita Roy-Chowdhuri
DADara L. Aisner
Dara L. Aisner
TATimothy Craig Allen
Timothy Craig Allen
MBMary Beth Beasley
Mary Beth Beasley
ABAlain Borczuk
Alain Borczuk
YYYasushi Yatabe
Yasushi Yatabe
The advent of targeted therapy in lung cancer has heralded a paradigm shift in the practice of cytopathology with the need for accurately subtyping lung carcinoma, as well as providing adequate material for molecular studies, to help guide clinical and therapeutic decisions. The variety and versatility of cytologic-specimen preparations offer significant advantages to molecular testing; however, they frequently remain underused. Therefore, evaluating the utility and adequacy of cytologic specimens is critical, not only from a lung cancer diagnosis standpoint but also for the myriad ancillary studies that are necessary to provide appropriate clinical management. A large fraction of lung cancers are diagnosed by aspiration or exfoliative cytology specimens, and thus, optimizing strategies to triage and best use the tissue for diagnosis and biomarker studies forms a critical component of lung cancer management. This review focuses on the opportunities and challenges of using cytologic specimens for molecular diagnosis of lung cancer and the role of cytopathology in the molecular era.

9 March 2020 in Archives of Pathology & Laboratory Medicine
Verified
Journal Article
Open access
PDF file
ISIrina Sobol
Irina Sobol
CCCarol L. Chen
Carol L. Chen
SMSyed S. Mahmood
Syed S. Mahmood
ABAlain Borczuk
Alain Borczuk
Context.—: Cardiac complications of immune checkpoint inhibitor therapy are rare, but reports of myocarditis are increasing. The findings have been described in case reports as lymphocytic myocarditis, but its histopathology is underreported. Objective.—: To review the histology of myocardial biopsy–proven cases of immune checkpoint–associated myocarditis and provide immunohistochemical characterization of the inflammatory infiltrate. Design.—: We have encountered 6 patients with biopsy-proven myocarditis in conjunction with therapy using anti–programmed death receptor-1 (PD-1)/programmed death ligand-1 (PD-L1) agents with and without cytotoxic T-lymphocyte associated protein 4 (CTLA-4) inhibitors and characterized the histopathology and immune cell profile. Results.—: The myocarditis was multifocal/diffuse and characterized by a predominant CD163-positive histiocytic infiltrate, with an associated CD8+ and PD-1+ T-lymphocytic infiltrate, some of which were granzyme B positive. Cardiac myocytes showed immunoreactivity for PD-L1 in areas of injury, confirmed using 2 different anti–PD-L1 clones. Four of 6 patients recovered from their cardiac injury. One patient had residual tachycardia-bradycardia syndrome and 1 patient expired. Conclusions.—: The diffuse lymphohistiocytic myocarditis associated with this therapy is relatively distinctive, and this diagnosis is strongly suggested based on the histopathologic findings in the correct clinical setting.