Tuomas Karhu

Mr. Tuomas Karhu


Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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28 April 2021 in Frontiers in Neuroscience
Verified
Journal Article
Open access
TKTuomas Karhu
Tuomas Karhu
SMSami Myllymaa
Sami Myllymaa
SNSami Nikkonen
Sami Nikkonen
DMDiego R. Mazzotti
Diego R. Mazzotti
JTJuha Töyräs
Juha Töyräs
TLTimo Leppänen
Timo Leppänen
Study Objectives: Obesity, older age, and male sex are recognized risk factors for sleep apnea. However, it is unclear whether the severity of hypoxic burden, an essential feature of sleep apnea, is associated with the risk of sleep apnea worsening. Thus, we investigated our hypothesis that the worsening of sleep apnea is expedited in individuals with more severe desaturations.Methods: The blood oxygen saturation (SpO2) signals of 805 Sleep Heart Health Study participants with mild sleep apnea [5 ≤ oxygen desaturation index (ODI) < 15] were analyzed at baseline and after a mean follow-up time of 5.2 years. Linear regression analysis, adjusted for relevant covariates, was utilized to study the association between baseline SpO2-derived parameters and change in sleep apnea severity, determined by a change in ODI. SpO2-derived parameters, consisting of ODI, desaturation severity (DesSev), desaturation duration (DesDur), average desaturation area (avg. DesArea), and average desaturation duration (avg. DesDur), were standardized to enable comparisons between the parameters.Results: In the group consisting of both men and women, avg. DesDur (β = 1.594, p = 0.001), avg. DesArea (β = 1.316, p = 0.004), DesDur (β = 0.998, p = 0.028), and DesSev (β = 0.928, p = 0.040) were significantly associated with sleep apnea worsening, whereas ODI was not (β = −0.029, p = 0.950). In sex-stratified analysis, avg. DesDur (β = 1.987, p = 0.003), avg. DesArea (β = 1.502, p = 0.024), and DesDur (β = 1.374, p = 0.033) were significantly associated with sleep apnea worsening in men.Conclusion: Longer and deeper desaturations are more likely to expose a patient to the worsening of sleep apnea. This information could be useful in the planning of follow-up monitoring or lifestyle counseling in the early stage of the disease.

21 September 2022 in Computer Methods and Programs in Biomedicine
Verified
Journal Article
Open access
TKTuomas Karhu
Tuomas Karhu
Timo LeppänenTimo Leppänen
Timo Leppänen
JTJuha Töyräs
Juha Töyräs
AOArie Oksenberg
Arie Oksenberg
SMSami Myllymaa
Sami Myllymaa
SNSami Nikkonen
Sami Nikkonen
Many sleep recording software used in clinical settings have some tools to automatically analyze the blood oxygen saturation (SpO2) signal by detecting desaturations. However, these tools are often inadequate for scientific research as they do not provide SpO2 signal-based parameters which are superior in the estimation of sleep apnea severity and related medical consequences. In addition, these software require expensive licenses and they lack batch analysis tools. Thus, we developed the first freely available automatic blood oxygen saturation analysis software (ABOSA) that provides sophisticated SpO2 signal-based parameters and enables batch analysis of large datasets. ABOSA was programmed with MATLAB. ABOSA automatically detects desaturation and recovery events from the SpO2 signals (EDF files) and calculates numerous parameters, such as oxygen desaturation index (ODI) and desaturation severity (DesSev). The accuracy of the ABOSA software was evaluated by comparing its desaturation scorings to manual scorings in Kuopio (n = 1981) and Loewenstein (n = 930) sleep apnea patient datasets. Validation was performed in a second-by-second manner by calculating Matthew's correlation coefficients (MCC) and median differences in parameter values. Finally, the performance of the ABOSA software was compared to two commercial software, Noxturnal and Profusion, in 100 patient subpopulations. As Noxturnal or Profusion does not calculate novel desaturation parameters, these were calculated with custom-made functions. The agreements between ABOSA and manual scorings were great in both Kuopio (MCC = 0.801) and Loewenstein (MCC = 0.898) datasets. However, ABOSA slightly overestimated the desaturation parameter values. The median differences in ODIs were 0.8 (Kuopio) and 0.0 (Loewenstein) events/h. Similarly, the median differences in DesSevs were 0.02 (Kuopio) and 0.01 (Loewenstein) percentage points. In a second-by-second analysis, ABOSA performed very similarly to Noxturnal and Profusion software in both Kuopio (MCCABOSA = 0.807, MCCNoxturnal = 0.807, MCCProfusion = 0.811) and Loewenstein (MCCABOSA = 0.904, MCCNoxturnal = 0.911, MCCProfusion = 0.871) datasets. Based on Noxturnal and Profusion scorings, the desaturation parameter values were similarly overestimated compared to ABOSA. ABOSA is an accurate and freely available software that calculates both traditional clinical parameters and novel parameters, provides a detailed characterization of desaturation and recovery events, and enables batch analysis of large datasets. These are features that no other software currently provides making ABOSA uniquely suitable for scientific research use.

10 August 2021 in Journal of Sleep Research
Verified
Journal Article
Open access
PDF file
TKTuomas Karhu
Tuomas Karhu
SMSami Myllymaa
Sami Myllymaa
SNSami Nikkonen
Sami Nikkonen
DMDiego R. Mazzotti
Diego R. Mazzotti
AKAntti Kulkas
Antti Kulkas
Timo LeppänenTimo Leppänen
Timo Leppänen
Summary: Intermittent hypoxaemia is a risk factor for numerous diseases. However, the reverse pathway remains unclear. Therefore, we investigated whether pre‐existing hypertension, diabetes or cardiovascular diseases are associated with the worsening of intermittent hypoxaemia. Among the included 2,535 Sleep Heart Health Study participants, hypertension (n = 1,164), diabetes (n = 170) and cardiovascular diseases (n = 265) were frequently present at baseline. All participants had undergone two polysomnographic recordings approximately 5.2 years apart. Covariate‐adjusted linear regression analyses were utilized to investigate the difference in the severity of intermittent hypoxaemia at baseline between each comorbidity group and the group of participants free from all comorbidities (n = 1,264). Similarly, we investigated whether the pre‐existing comorbidities are associated with the progression of intermittent hypoxaemia. Significantly higher oxygen desaturation index (β = 1.77 [95% confidence interval: 0.41–3.13], p = 0.011), desaturation severity (β = 0.07 [95% confidence interval: 0.00–0.14], p = 0.048) and desaturation duration (β = 1.50 [95% confidence interval: 0.31–2.69], p = 0.013) were observed in participants with pre‐existing cardiovascular diseases at baseline. Furthermore, the increase in oxygen desaturation index (β = 3.59 [95% confidence interval: 1.78–5.39], p < 0.001), desaturation severity (β = 0.08 [95% confidence interval: 0.02–0.14], p = 0.015) and desaturation duration (β = 2.60 [95% confidence interval: 1.22–3.98], p < 0.001) during the follow‐up were higher among participants with diabetes. Similarly, the increase in oxygen desaturation index (β = 2.73 [95% confidence interval: 1.15–4.32], p = 0.001) and desaturation duration (β = 1.85 [95% confidence interval: 0.62–3.08], p = 0.003) were higher among participants with cardiovascular diseases. These results suggest that patients with pre‐existing diabetes or cardiovascular diseases are at increased risk for an expedited worsening of intermittent hypoxaemia. As intermittent hypoxaemia is an essential feature of sleep apnea, these patients could benefit from the screening and follow‐up monitoring of sleep apnea.

8 December 2022 in Journal of Sleep Research
Verified
Journal Article
Open access
PPPurbanka Pahari
Purbanka Pahari
HKHenri Korkalainen
Henri Korkalainen
TKTuomas Karhu
Tuomas Karhu
MRMarika Rissanen
Marika Rissanen
Erna Sif ArnardóttirErna Sif Arnardóttir
Erna Sif Arnardóttir
SNSami Nikkonen
Sami Nikkonen
Summary: Obstructive sleep apnea (OSA)‐related intermittent hypoxaemia is a potential risk factor for different OSA comorbidities, for example cardiovascular disease. However, conflicting results are found as to whether intermittent hypoxaemia is associated with impaired vigilance. Therefore, we aimed to investigate how desaturation characteristics differ between the non‐impaired vigilance and impaired vigilance patient groups formed based on psychomotor vigilance task (PVT) performance and compared with traditional OSA severity parameters. The study population comprised 863 patients with suspected OSA who underwent a PVT test before polysomnography. The conventional OSA parameters, for example, the apnea‐hypopnea index, oxygen desaturation index, and arousal index were computed. Furthermore, the median desaturation area, fall area, recovery area, and desaturation depth were computed with the pre‐event baseline reference and with reference to the 100% oxygen saturation level. Patients were grouped into best‐ and worst‐performing quartiles based on the number of lapses in PVT (Q1: PVT lapses 36). The association between parameters and impaired vigilance was evaluated by cumulative distribution functions (CDFs) and binomial logistic regression. Based on the CDFs, patients in Q4 had larger desaturation areas, recovery areas, and deeper desaturations when these were referenced to 100% saturation compared with Q1. The odds ratio (OR) of the median desaturation area (OR = 1.56), recovery area (OR = 1.71), and depth (OR = 1.65) were significantly elevated in Q4 in regression models. However, conventional OSA parameters were not significantly associated with impaired vigilance (ORs: 0.79–1.09). Considering desaturation parameters with a 100% SpO2 reference in the diagnosis of OSA could provide additional information on the severity of OSA and related daytime vigilance impairment.

3 October 2022 in Sleep Medicine
Verified
Journal Article
Open access
TKTuomas Karhu
Tuomas Karhu
TLTimo Leppänen
Timo Leppänen
HKHenri Korkalainen
Henri Korkalainen
SMSami Myllymaa
Sami Myllymaa
BDBrett Duce
Brett Duce
SNSami Nikkonen
Sami Nikkonen
Interest in using blood oxygen desaturations in the diagnostics of sleep apnea has risen in recent years. However, no standardized criteria for desaturation scoring exist which complicates the drawing of solid conclusions from literature. We investigated how different desaturation scoring criteria affect the severity of nocturnal hypoxic load and the prediction of impaired daytime vigilance in 845 patients. Desaturations were scored based on three features: 1) minimum oxygen saturation drop during the event (2-20%, 1% interval), 2) minimum duration of the event (2-20s, 1s interval), and 3) maximum plateau duration within the event (5-60s, 5s interval), resulting in 4332 different scoring criteria. The hypoxic load was described with oxygen desaturation index (ODI), desaturation severity (DesSev), and desaturation duration (DesDur) parameters. Association between hypoxic load and impaired vigilance was investigated with covariate-adjusted area under curve (AUC) analyses by dividing patients into normal (≤5 lapses) and impaired (≥36 lapses) vigilance groups based on psychomotor vigilance task performance. The severity of hypoxic load varied greatly between different scoring criteria. For example, median ODI ranged between 0.4 and 12.9 events/h, DesSev 0.01-0.23 %-point, and DesDur 0.3-9.6 %-point when the minimum transient drop criterion of 3% was used and other two features were altered. Overall, the minimum transient drop criterion had the largest effect on parameter values. All models with differently determined parameters predicted impaired vigilance moderately (AUC = 0.722-0.734). Desaturation scoring criteria greatly affected the severity of hypoxic load. However, the difference in the prediction of impaired vigilance between different criteria was rather small.

15 March 2022 in Journal of Sleep Research
Verified
Journal Article
Open access
FSFjola D. Sigurdardottir
Fjola D. Sigurdardottir
CØCaroline Tonje Øverby
Caroline Tonje Øverby
SNSami Nikkonen
Sami Nikkonen
TKTuomas Karhu
Tuomas Karhu
TDToril Dammen
Toril Dammen
HHHarald Hrubos-Strøm
Harald Hrubos-Strøm
Summary: Novel diagnostic markers for obstructive sleep apnea beyond the apnea–hypopnea index (AHI) have been introduced. There are no studies on their association with markers of subclinical myocardial injury. We assessed the association between novel desaturation parameters and elevated cardiac troponin I and T. Participants with polysomnography (498) from the Akershus Sleep Apnea study were divided into normal and elevated biomarker groups based on sex‐specific concentration thresholds (cardiac troponin I: ≥4 ng/L for women, ≥6 ng/L for men; and cardiac troponin T: ≥7 ng/L for women, ≥8 ng/L for men). Severity of obstructive sleep apnea was evaluated with the AHI, oxygen desaturation index, total sleep time with oxygen saturation below 90% (T90), lowest oxygen saturation (Min SpO2%), and novel oxygen desaturation parameters: desaturation duration and desaturation severity. How the AHI and novel desaturation parameters predicted elevated cardiac troponin I and cardiac troponin T levels was assessed by the area under the curve (AUC). Based on multivariable‐adjusted linear regression, the AHI (β = 0.004, p = 0.012), desaturation duration (β = 0.007, p = 0.004), and desaturation severity (β = 0.147, p = 0.002) were associated with cardiac troponin I levels but not cardiac troponin T. T90 was associated with cardiac troponin I (β = 0.006, p = 0.009) and cardiac troponin T (β = 0.005, p = 0.007). The AUC for the AHI 0.592 (standard error 0.043) was not significantly different from the AUC of T90 (SD 0.640, p = 0.08), desaturation duration 0.609 (SD 0.044, p = 0.42) or desaturation severity 0.616 (SD 0.043, p = 0.26) in predicting myocardial injury as assessed by cardiac troponin I. Oxygen desaturation parameters and the AHI were associated with cardiac troponin I levels but not cardiac troponin T levels. Novel oxygen desaturation parameters did not improve the prediction of subclinical myocardial injury compared to the AHI.