Sarah Choksi

Dr. Sarah Choksi

orcid

Research Focus & Metrics

Academic Career Length

4Years (2023-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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14 August 2023 in Surgical Endoscopy
Verified
Journal Article
Closed access
PDF file
SCSarah Choksi
Sarah Choksi
SSSkyler Szot
Skyler Szot
CZChengbo Zang
Chengbo Zang
KYKaan Yarali
Kaan Yarali
YCYuqing Cao
Yuqing Cao
FFFilippo Filicori
Filippo Filicori

27 May 2023 in Bioengineering
Verified
Journal Article
Open access
PDF file
CZChengbo Zang
Chengbo Zang
MTMehmet Kerem Turkcan
Mehmet Kerem Turkcan
SNSanjeev Narasimhan
Sanjeev Narasimhan
YCYuqing Cao
Yuqing Cao
KYKaan Yarali
Kaan Yarali
ZKZoran Kostic
Zoran Kostic
Video-recorded robotic-assisted surgeries allow the use of automated computer vision and artificial intelligence/deep learning methods for quality assessment and workflow analysis in surgical phase recognition. We considered a dataset of 209 videos of robotic-assisted laparoscopic inguinal hernia repair (RALIHR) collected from 8 surgeons, defined rigorous ground-truth annotation rules, then pre-processed and annotated the videos. We deployed seven deep learning models to establish the baseline accuracy for surgical phase recognition and explored four advanced architectures. For rapid execution of the studies, we initially engaged three dozen MS-level engineering students in a competitive classroom setting, followed by focused research. We unified the data processing pipeline in a confirmatory study, and explored a number of scenarios which differ in how the DL networks were trained and evaluated. For the scenario with 21 validation videos of all surgeons, the Video Swin Transformer model achieved ~0.85 validation accuracy, and the Perceiver IO model achieved ~0.84. Our studies affirm the necessity of close collaborative research between medical experts and engineers for developing automated surgical phase recognition models deployable in clinical settings.

14 February 2025 in Surgical Endoscopy
Verified
Journal Article
Closed access
SCSarah Choksi
Sarah Choksi
MBMattia Ballo
Mattia Ballo
CPCraig Profant
Craig Profant
KPKatherine Portelli
Katherine Portelli
VDVikrom Dhar
Vikrom Dhar
FFFilippo Filicori
Filippo Filicori

20 July 2023 in Surgical Endoscopy
Verified
Journal Article
Closed access
PDF file
SCSarah Choksi
Sarah Choksi
DBDaniel P. Bitner
Daniel P. Bitner
KCKatherine Carsky
Katherine Carsky
PAPoppy Addison
Poppy Addison
RWRachel Webman
Rachel Webman
FFFilippo Filicori
Filippo Filicori

20 May 2025 in Electronics
Verified
Journal Article
Open access
PDF file
SNSanjeev Narasimhan
Sanjeev Narasimhan
MTMehmet Kerem Turkcan
Mehmet Kerem Turkcan
MBMattia Ballo
Mattia Ballo
SCSarah Choksi
Sarah Choksi
FFFilippo Filicori
Filippo Filicori
ZKZoran Kostic
Zoran Kostic
Tracking the precise movement of surgical tools is essential for enabling automated analysis, providing feedback, and enhancing safety in robotic-assisted surgery. Accurate 3D tracking of surgical tooltips is challenging to implement when using monocular videos due to the complexity of extracting depth information. We propose a pipeline that combines state-of-the-art foundation models—Florence2 and Segment Anything 2 (SAM2)—for zero-shot 2D localization of tooltip coordinates using a monocular video input. Localization predictions are refined through supervised training of the YOLOv11 segmentation model to enable real-time applications. The depth estimation model Metric3D computes the relative depth and provides tooltip camera coordinates, which are subsequently transformed into world coordinates via a linear model estimating rotation and translation parameters. An experimental evaluation on the JIGSAWS Suturing Kinematic dataset achieves a 3D Average Jaccard score on tooltip tracking of 84.5 and 91.2 for the zero-shot and supervised approaches, respectively. The results validate the effectiveness of our approach and its potential to enhance real-time guidance and assessment in robotic-assisted surgical procedures.

1 April 2025 in Artificial Intelligence Surgery
Verified
Journal Article
Open access
PDF file
SCSarah Choksi
Sarah Choksi
SNSanjeev Narasimhan
Sanjeev Narasimhan
MBMattia Ballo
Mattia Ballo
MTMehmet Turkcan
Mehmet Turkcan
YHYiran Hu
Yiran Hu
FFFilippo Filicori
Filippo Filicori
Aim: Automated surgical skill assessment is poised to become an invaluable asset in surgical residency training. In our study, we aimed to create deep learning (DL) computer vision artificial intelligence (AI) models capable of automatically assessing trainee performance and determining proficiency on robotic suturing tasks. Methods: Participants performed two robotic suturing tasks on a bench-top model created by our lab. Videos were recorded of each surgeon performing a backhand suturing task and a railroad suturing task at 30 frames per second (FPS) and downsampled to 15 FPS for the study. Each video was segmented into four sub-stitch phases: needle positioning, targeting, driving, and withdrawal. Each sub-stitch was annotated with a binary technical score (ideal or non-ideal), reflecting the operator’s skill while performing the suturing action. For DL analysis, 16-frame overlapping clips were sampled from the videos with a stride of 1. To extract the features useful for classification, two pretrained Video Swin Transformer models were fine-tuned using these clips: one to classify the sub-stitch phase and another to predict the technical score. The model outputs were then combined and used to train a Random Forest Classifier to predict the surgeon's proficiency level. Results: A total of 102 videos from 27 surgeons were evaluated using 3-fold cross-validation, 51 videos for the backhand suturing task and 51 videos for the railroad suturing task. Performance was assessed on sub-stitch classification accuracy, technical score accuracy, and surgeon proficiency prediction. The clip-based Video Swin Transformer models achieved an average classification accuracy of 70.23% for sub-stitch classification and 68.4% for technical score prediction on the test folds. Combining the model outputs, the Random Forest Classifier achieved an average accuracy of 66.7% in predicting surgeon proficiency. Conclusion: This study shows the feasibility of creating a DL-based automatic assessment tool for robotic-assisted surgery. Using machine learning models, we predicted the proficiency level of a surgeon with 66.7% accuracy. Our dry lab model proposes a standardized training and assessment tool for suturing tasks using computer vision.