Many halophytes are considered to be salt hyperaccumulators, adopting ion extrusion and inclusion mechanisms. Such plants, with high aboveground biomass, may play crucial roles in saline habitats, including soil desalination and phytoremediation of polluted soils and waters. These plants cause significant changes in some of the soil’s physical and chemical properties; and have proven efficient in removing heavy metals and metabolizing organic compounds from oil and gas activities. Halophytes in Qatar, such as Halopeplis perfoliata, Salicornia europaea, Salsola soda, and Tetraena qatarensis, are shown here to play significant roles in the phytoremediation of polluted soils and waters. Microorganisms associated with these halophytes (such as endophytic bacteria) might boost these plants to remediate saline and polluted soils. A significant number of these bacteria, such as Bacillus spp. and Pseudomonas spp., are reported here to play important roles in many sectors of life. We explore the mechanisms adopted by the endophytic bacteria to promote and support these halophytes in the desalination of saline soils and phytoremediation of polluted soils. The possible roles played by endophytes in different parts of native plants are given to elucidate the mechanisms of cooperation between these native plants and the associated microorganisms.

The Arabian Gulf ranks among the world’s most arid and warm regions; the land has high salinity levels with many Sabkhas and receives little precipitation. This region holds about one-third of the world’s oil supply. Qatar is the leading gas producer worldwide, which raises many concerns about the pollution of the sea, groundwater, and soil. Thus, the Arabian Gulf area has paid particular attention to environmental studies since the environmental status of this region imposed unique biological diversity, and microbial ecology has gained special importance following the identification of promising roles of microorganisms. This review article discusses the microbial ecology at the main habitats of the State of Qatar. We discuss important principles for successful ecological restoration and future perspectives of using biological approaches to solve many problems related to health, the economy, and agriculture. There are at least five microbial communities that have been recognized at the Qatari habitats: marine environment, salt marshes and mangrove forests, the arid lands (including dune communities), wetlands (including pond communities), and Rawdahs (including the Ghaf tree communities). Although, the environmental conditions of this region are almost the same, these habitats are compared with those at other countries of the Arabian Gulf whenever necessary, as each habitat has its own peculiar characteristics. Some case studies are presented to describe the biochemical characterizations of bacterial isolates from soils and leaf surface of native plants, including halophytes and xerophytes at these habitats. These studies rarely went beyond the general identification at species levels. There is a discussion about the possible roles of microorganisms at the rhizosphere, non-rhizosphere, and phyllosphere, and using plant exudates to control microbial activity. However, modern approach (culture-independent methods) addressing these topics has opened the door for deeper investigations, and to explore the roles played by microorganisms at these habitats. These methods have already begun during the last decade as serious step to solve many environmental issues. In the future, it is very likely that microorganisms will be used to tackle many pollution issues, as well as health, agricultural, and economic problems.

Anthropogenic and industrial wastewater (IWW) could be an additional future source of water to support the needs of the people of the State of Qatar. New lagoons have been built using modern technologies to optimize water use and waste recycling, as well as increasing the green spaces around the country. To achieve successful development of these new lagoons, lessons should be learned from the old ponds by examining their biodiversity, ecology, and the roles played by aquatic plants and algae to remediate wastewaters at these ponds. The perspectives of using IWW (from oil and gas activities), that is currently pumped deep into the ground are presented. Instead of causing great damage to groundwater, IWW can be stored in artificial ponds prepared for ridding it of all impurities and pollutants of various types, organic and inorganic, thereby making it serviceable for various human uses. Phycoremediation, bioremediation, and phytoremediation methods adopted by algae, bacteria and aquatic native plants are discussed, and special attention should be paid to those that proved successful in removing heavy metals and degrading organic compounds. At least three native plants namely: Amaranthus viridis, Phragmites australis, and Typha domingensis should be paid special attention, since these plants are efficient in remediation of arsenic and mercury; elements found abundantly in wastewater of gas activities. Some promising modern and innovative experiences and biotechnologies to develop efficient transgenic plants and microorganisms in removing and degrading pollutants are discussed, as an important strategy to keep the ecosystem clean and safe. Novelty statement Industrial wastewater (IWW) could be an alternative source of water at the Arabian Gulf region. Currently, IWW is pumped deep into the ground causing a great damage to groundwater; little information about this issue has been reported. Such IWW can be stored in artificial ponds designed for ridding them of all impurities of various types; various remediation methods can be used. Modern biotechnology to develop transgenic plants and microorganisms to enhance these remediation methods can be adopted.

One of the outstanding challenges facing humankind is increasing crop production under various types of severe environmental conditions. Many measures have been taken to adopt molecular and biotechnological approaches that lead to the development of transgenic plants able to deal with such harsh and polluted environments. However, such solutions could be very expensive and require considerable efforts and time to achieve these objectives. The main objective of this review is to discuss the new biological solutions that have emerged in the last decade, as environmentally friendly approaches, perhaps to support and / or replace the present efforts. These solutions based on plant-microbe interactions could be a lifeline and promising alternative strategy to create plants with a high resistance to the extreme environments. During the last two decades research projects have been conducted to study the ecology, identify the features, and the ecophysiology of native plants and the associated microorganisms in the Arabian Gulf region and particularly in Qatar. Many physiological and biochemical parameters have been determined, including organic solutes (amino acids like proline, glycinebetaine: GB, soluble sugars, ...etc), photosynthetic pigments, organic acids and inorganic ions especially heavy metals, along with the physical and chemical properties of the soil in various locations of the State of Qatar. Also, the microorganisms adjacent to and associated with these native plants were identified to elucidate the possible roles in the soil biota in supporting these plants against extreme environmental conditions. Investigations of native plants in the Arabian Gulf States during the last decade have shown that wild plants exhibit different abilities to accumulate organic solutes to cope with the harsh natural environments. Pollution is a major factor stressing wildlife in this region due to the expansion of urban sectors and industrial activities of oil and gas. Compatible osmolytes, like proline, accumulate in wild plants in response to severe environmental conditions and heavy metal contaminated soil. Accumulation of these solutes in plant tissues could provide some level of adaptation and resistance against all these types of environmental stresses. We present some promising efforts in the Arabian Gulf region to remediate desert soil and water polluted with heavy metals and petroleum hydrocarbons. Substantial evidence is introduced about the roles of microorganisms associated with wild plants in natural habitats, such association may help them cope with the extreme stresses. Possible mechanisms adopted by microorganisms in alleviating the harsh abiotic stresses facing the wild life are discussed, one of which is the promotion of biosynthesis and transport of organic solutes to the plants. Also, the main possibilities of the origin of activities of the accumulation of compatible organic solutes are suggested and the objectives of the future research are discussed.

The air, water, and lands of the Arabian Gulf countries are exposed to contamination involving organic and inorganic components resulting from industrial energy sector activities. In Qatar, marine life and air are the primary elements of the ecosystem that pollution has negatively affected since the discovery and exportation of oil and gas. For example, the mean concentration of PM2.5 reached 105 µg/m3 in 2016. This poor air quality has been attributed to several factors: dust storms, vehicle emissions, and industrial emissions. Marine life around the peninsula of Qatar has been threatened by many factors, including discharge of desalinated seawater, oil and gas activities, and the impact of climate change. Studies conducted after multiple major events showed that levels of various types of pollutants were at acceptable levels. Some areas in the Arabian Gulf, such as the coasts of Saudi Arabia and Bahrain, are still considered chronically polluted and need continual monitoring in the long term. This review discusses the pollution status on the Qatari coastlines and the reasons behind the persistence of current levels of pollution in Arabian Gulf water. The role of microorganisms (bacteria, algae, and fungi) in a biological approach for environmental manipulation of pollution problems is discussed. The agricultural lands in Qatar are possible sites of pollution due to the potential expansion of the energy, industry, and construction sectors in the future. Currently, industrial wastewater is pumped deep into the ground, and seawater is intruding into the main-land, which is causing significant contamination of soils used for the cultivation of various crops. Possible measures are reported, and practical solutions to future pollution risks are discussed.