Gnomoniopsis smithogilvyi (Gs) is a relevant pathogen of chestnut since it provokes significant losses worldwide. The aim of this study was to screen the effect of a new biocontrol agent (BCA) against Gs isolated from chestnut (CIMO-BCA1) on the mould’s growth as well as on the production of secondary metabolites. The chemical fungicide Horizon^® (tebuconazole; HOR) and the commercial biofungicide Serenade^® ASO (Bacillus amyloliquefaciens QST 713; ASO) were also tested. Three concentrations of each antifungal (HOR, ASO, and CIMO-BCA1) were faced with Gs in the growth study in a chestnut-based medium. The intermediate concentrations were used for the analyses of metabolites by LC-MS/MS. CIMO-BCA1 was also identified as B. amyloliquefaciens. All agents reduced the mould’s growth, and the CIMO-BCA1 treatment with an intermediate concentration was the most effective. The metabolite analysis revealed, for the first time, the production of two mycotoxins by Gs, including 3-nitropropionic acid and diplodiatoxin. Additionally, HOR stimulated the production of diplodiatoxin. In conclusion, Gs could present a health risk for consumers. B. amyloliquefaciens strains effectively decreased the mould’s growth, but they must be applied at effective concentrations or in combination with other strategies to completely reduce the hazard.

The endosymbiotic bacteria that live within the body of insects are involved in many aspects of the host physiology, including reproduction and defense. Thus, the exploitation of these microorganisms may have practical applications for the management of vector-borne diseases. In the Mediterranean area, Philaenus spumarius was identified as the main vector of Xylella fastidiosa. This xylem-restricted bacterium is responsible for several diseases in a variety of agricultural crops of high importance, for which there are not any effective control methods. Thus, in this work we evaluate different media types for the isolation and growth of bacteria living within P. spumarius adults, for their potential exploitation in the management of X. fastidiosa. Specifically, we compared the effect of minimal (Luria Bertani—LB) and complex (Modified Melin-Norkrans—MMN) media, with and without fetal bovine or gelling agents, on the number and diversity of bacteria. The collection of isolates obtained was further genetically characterized by repetitive element–based PCR method (BOX-PCR) and sequencing of the 16S ribosomal RNA (rRNA) gene. The results showed no significant differences in the abundance and diversity of bacteria among the two media tested (LB and MMN). The addition of fetal bovine to the media leads to a slight increase in bacterial abundance, in particular in MMN medium. While the liquid media led to a significant increase in abundance, the solid media facilitated the growth of more diverse bacterial taxa. The comparison between BOX-PCR and 16S rRNA gene sequencing for the analysis of 57 bacterial isolates revealed a greater discriminatory power of the former, allowing the differentiation of the bacteria even at the intra-species level. The clustering of the isolates using BOX-PCR fingerprinting was different to that obtained from the 16S rRNA gene phylogenetic tree. The 16S rRNA gene sequencing method proved to be more suitable in phylogenetic evaluations, generally grouping isolates belonging to the same genus.