Waleed Ali

Dr. Waleed Ali


Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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5 June 2018 in Frontiers in Marine Science
Verified
Journal Article
Open access
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JKJordan Krisfalusi-Gannon
Jordan Krisfalusi-Gannon
WAWaleed Ali
Waleed Ali
KDKristen Dellinger
Kristen Dellinger
LRLee Robertson
Lee Robertson
TBTerry E. Brady
Terry E. Brady
ADAnthony L. Dellinger
Anthony L. Dellinger
Every year the Atlantic horseshoe crab (Limulus polyphemus) arrives on shore to spawn, a sight once taken for granted. However, in addition to the gradual climate changes impacting all ecosystems, commercial demand from the widespread application of Atlantic horseshoe crab blood in industrial endotoxin testing and steady use as eel and whelk bait has brought the future of this enduring species into question. In response, regulations have been adopted to enhance the traceability and record keeping of horseshoe crab harvest, which has historically been difficult to track. However, these regulations do not restrict or limit LAL harvest in any significant manner. Still, sometimes-lethal biomedical bleeding process and associated behavioral changes pose a risk to horseshoe crab viability after bleeding and once returned to the waters. As a result, regulators and environmentalists are concerned that current trends and overfishing of this marine arthropod will significantly impact the surrounding ecosystem. This review examines their role and recent trends in the biomedical industry that are impacting these ancient creatures and the derivative effect on shorebirds, while considering emerging alternatives where feasible, as well as ways to ensure sustainable and pragmatic harvesting strategies. Ultimately, healthy populations of horseshoe crabs are vital to restoring and maintaining ecosystems while balancing the need for medical and research applications entirely dependent on these unique creatures.

30 September 2019 in PLOS Pathogens
Verified
Journal Article
Open access
PDF file
DVDenis Voronin
Denis Voronin
ESEmily Schnall
Emily Schnall
AGAlexandra Grote
Alexandra Grote
SJShabnam Jawahar
Shabnam Jawahar
WAWaleed Ali
Waleed Ali
SLSara Lustigman
Sara Lustigman
Human parasitic nematodes are the causative agents of lymphatic filariasis (elephantiasis) and onchocerciasis (river blindness), diseases that are endemic to more than 80 countries and that consistently rank in the top ten for the highest number of years lived with disability. These filarial nematodes have evolved an obligate mutualistic association with an intracellular bacterium, Wolbachia, a symbiont that is essential for the successful development, reproduction, and survival of adult filarial worms. Elimination of the bacteria causes adult worms to die, making Wolbachia a primary target for developing new interventional tools to combat filariases. To further explore Wolbachia as a promising indirect macrofilaricidal drug target, the essential cellular processes that define the symbiotic Wolbachia-host interactions need to be identified. Genomic analyses revealed that while filarial nematodes encode all the enzymes necessary for glycolysis, Wolbachia does not encode the genes for three glycolytic enzymes: hexokinase, 6-phosphofructokinase, and pyruvate kinase. These enzymes are necessary for converting glucose into pyruvate. Wolbachia, however, has the full complement of genes required for gluconeogenesis starting with pyruvate, and for energy metabolism via the tricarboxylic acid cycle. Therefore, we hypothesized that Wolbachia might depend on host glycolysis to maintain a mutualistic association with their parasitic host. We did conditional experiments in vitro that confirmed that glycolysis and its end-product, pyruvate, sustain this symbiotic relationship. Analysis of alternative sources of pyruvate within the worm indicated that the filarial lactate dehydrogenase could also regulate the local intracellular concentration of pyruvate in proximity to Wolbachia and thus help control bacterial growth via molecular interactions with the bacteria. Lastly, we have shown that the parasite’s pyruvate kinase, the enzyme that performs the last step in glycolysis, could be a potential novel anti-filarial drug target. Establishing that glycolysis is an essential component of symbiosis in filarial worms could have a broader impact on research focused on other intracellular bacteria-host interactions where the role of glycolysis in supporting intracellular survival of bacteria has been reported. Wuchereria bancrofti, Brugia malayi, Brugia timori, and Onchocerca volvulus are human parasitic nematodes and causative agents of lymphatic filariasis (LF, elephantiasis) and onchocerciasis (river blindness). These neglected tropical diseases are ranked in the top ten for the highest years lived with disability. In 2016, the global prevalence of LF was between 24.8 to 36.1 million while for onchocerciasis it was 9.5 to 24.2 million. These nematodes have evolved a mutualistic association with an intracellular bacterium, Wolbachia, an obligatory symbiont that is essential for the successful development, reproduction, and survival of adult filarial worms. Consequently, these bacteria are a target of interest for developing new interventional tools to combat the filariases. To develop macrofilaricidal drug targets, we must identify the cellular processes that define the symbiotic relationship between the bacteria and their filarial hosts. Here, we evaluated the role of glycolysis—a pathway that is incomplete in Wolbachia—in the symbiotic relationship. We found that glycolysis is an essential metabolic pathway that supports the symbiosis between the filarial worm and Wolbachia, and demonstrated that this pathway, on which Wolbachia rely, can be exploited to discover new or repurposed drugs, and thus facilitate anti-filarial elimination goals.

30 September 2023 in Genes
Verified
Journal Article
Open access
PDF file
WAWaleed Ali
Waleed Ali
WXWeirui Xiao
Weirui Xiao
DJDaniel Jacobs
Daniel Jacobs
AKAndre Kajdacsy-Balla
Andre Kajdacsy-Balla
The escalating prevalence of bladder cancer, particularly urothelial carcinoma, necessitates innovative approaches for prognosis and therapy. This study delves into the significance of genes related to epithelial–mesenchymal transition (EMT), a process inherently linked to carcinogenesis and comparatively better studied in other cancers. We examined 1184 EMT-related gene expression levels in bladder urothelial cancer cases through the TCGA dataset. Genes shown to be differentially expressed in relation to survival underwent further network and enrichment analysis to uncover how they might shape disease outcomes. Our in silico analysis revealed a subset of 32 genes, including those significantly represented in biological pathways such as VEGF signaling and bacterium response. In addition, these genes interact with genes involved in the JAK-STAT signaling pathway. Additionally, some of those 32 genes have been linked to immunomodulators such as chemokines CCL15 and CCL18, as well as to various immune cell infiltrates. Our findings highlight the prognostic utility of various EMT-related genes and identify possible modulators of their effect on survival, allowing for further targeted wet lab research and possible therapeutic intervention.

26 November 2022 in Archives of Biochemistry and Biophysics
Verified
Journal Article
Closed access
WAWaleed Ali
Waleed Ali
DJDaniel Jacobs
Daniel Jacobs
SZSimon Zhen
Simon Zhen
ADAlan M. Diamond
Alan M. Diamond
AKAndré Kajdacsy-Balla
André Kajdacsy-Balla

Verified
Journal Article
Open access
PDF file
WAWaleed Ali
Waleed Ali
WXWeirui Xiao
Weirui Xiao
HHHenry Hoang
Henry Hoang
VCVincent Cali
Vincent Cali
AKAndre Kajdacsy-Balla
Andre Kajdacsy-Balla
Protein arginine methylation is among the most important post-translational modifications and has been studied in cancers such as those of the lung and breast. However, comparatively less has been investigated regarding hepatocellular carcinoma, with an annual incidence of almost one million cases. Through using in silico methods, this study examined arginine methylation-related gene expression and methylation levels, and alongside network and enrichment analysis attempted to find how said genes can drive tumorigenesis and offer possible therapeutic targets. We found a robust relationship among the selected methylation genes, with ⅞ showing prognostic value regarding overall survival, and a medley of non-arginine methylation pathways also being highlighted through the aforementioned analysis. This study furthers our knowledge of the methylation and expression patterns of arginine histone methylation-related genes, offering jumping points for further wet-lab studies.