The Eastern Boundary Upwelling Systems (EBUS) contribute to one fifth of the global catches in the ocean. Often associated with Oxygen Minimum Zones (OMZs), EBUS represent key regions for the oceanic nitrogen (N) cycle. Important bioavailable N loss due to denitrification and anammox processes as well as greenhouse gas emissions (e.g, N₂O) occur also in these EBUS. However, their dynamics are currently crudely represented in global models. In the climate change context, improving our capability to properly represent these areas is crucial due to anticipated changes in the winds, productivity, and oxygen content. We developed a biogeochemical model (BioEBUS) taking into account the main processes linked with EBUS and associated OMZs. We implemented this model in a 3-D realistic coupled physical/biogeochemical configuration in the Namibian upwelling system (northern Benguela) using the high-resolution hydrodynamic ROMS model. We present here a validation using in situ and satellite data as well as diagnostic metrics and sensitivity analyses of key parameters and N₂O parameterizations. The impact of parameter values on the OMZ off Namibia, on N loss, and on N₂O concentrations and emissions is detailed. The model realistically reproduces the vertical distribution and seasonal cycle of observed oxygen, nitrate, and chlorophyll a concentrations, and the rates of microbial processes (e.g, NH₄⁺ and NO₂⁻ oxidation, NO₃⁻ reduction, and anammox) as well. Based on our sensitivity analyses, biogeochemical parameter values associated with organic matter decomposition, vertical sinking, and nitrification play a key role for the low-oxygen water content, N loss, and N₂O concentrations in the OMZ. Moreover, the explicit parameterization of both steps of nitrification, ammonium oxidation to nitrate with nitrite as an explicit intermediate, is necessary to improve the representation of microbial activity linked with the OMZ. The simulated minimum oxygen concentrations are driven by the poleward meridional advection of oxygen-depleted waters offshore of a 300 m isobath and by the biogeochemical activity inshore of this isobath, highlighting a spatial shift of dominant processes maintaining the minimum oxygen concentrations off Namibia. In the OMZ off Namibia, the magnitude of N₂O outgassing and of N loss is comparable. Anammox contributes to about 20% of total N loss, an estimate lower than currently assumed (up to 50%) for the global ocean.

This study investigates the effect of mesoscale eddies on air–sea heat and fresh water exchange in the tropical Atlantic Ocean (TAO) using 8 years of satellite altimetry data, combined with sea surface temperature (SST), latent and sensible heat fluxes (LHF and SHF), infrared fluxes (IRF) and precipitation (PR) data. Results indicate that approximately ∼40% of cyclonic eddies contribute to warm SST anomalies, and ∼40% of anticyclonic eddies contribute to cold SST anomalies. Eddies were found to play a role in the variability in LHF, SHF and IRF, contributing 10–35% of their total variability, with the largest contributions observed beneath the intertropical convergence zone (ITCZ) and frontal SST areas. Composite analysis of SST and heat flux anomalies over eddies suggested that the anomalies created through horizontal advection processes may not significantly impact the overall LHF, SHF and IRF over eddies, contrary to vertical processes. Despite a lack of clear correlation between heat flux and PR anomalies over eddies in the TAO, significant correlations were found beneath the ITCZ, suggesting that eddies may impact both heat fluxes and PR in the ITCZ region. This study provides an original contribution to the understanding of the impact of ocean mesoscale eddies on the atmosphere in the TAO.

In this paper, we analyse the results from a numerical model at high resolution. We focus on the formation and maintenance of subsurface equatorial currents in the Gulf of Guinea and we base our analysis on the evolution of potential vorticity (PV). We highlight the link between submesoscale processes (involving mixing, friction and filamentation), mesoscale vortices and the mean currents in the area. In the simulation, eastward currents, the South and North Equatorial Undercurrents (SEUC and NEUC respectively) and the Guinea Undercurrent (GUC), are shown to be linked to the westward currents located equatorward. We show that east of 20° W, both westward and eastward currents are associated with the spreading of PV tongues by mesoscale vortices. The Equatorial Undercurrent (EUC) brings salty waters into the Gulf of Guinea. Mixing diffuses the salty anomaly downward. Meridional advection, mixing and friction are involved in the formation of fluid parcels with PV anomalies in the lower part and below the pycnocline, north and south of the EUC, in the Gulf of Guinea. These parcels gradually merge and vertically align, forming nonlinear anticyclonic vortices that propagate westward, spreading and horizontally mixing their PV content by stirring filamentation and diffusion, up to 20° W. When averaged over time, this creates regions of nearly homogeneous PV within zonal bands between 1.5° and 5° S or N. This mean PV field is associated with westward and eastward zonal jets flanking the EUC with the homogeneous PV tongues corresponding to the westward currents, and the strong PV gradient regions at their edges corresponding to the eastward currents. Mesoscale vortices strongly modulate the mean fields explaining the high spatial and temporal variability of the jets.

We analyse the results from a numerical model at high resolution. We focus on the formation and maintenance of subsurface equatorial currents in the Gulf of Guinea and we base our analysis on the evolution of potential vorticity (PV). We highlight the link between submesoscale processes (involving mixing, friction and filamentation), mesoscale vortices and the mean currents in the area. In the simulation, eastward currents, the South and North Equatorial Undercurrents (SEUC and NEUC respectively) and the Guinea Undercurrent (GUC), are shown to be linked to the westward currents located equatorward. We show that east of 20◦W, both westward and eastward currents are associated with the spreading of PV tongues by mesoscale vortices. The Equatorial Undercurrent (EUC) brings salty waters into the Gulf of Guinea. Mixing diffuses the salty anomaly downward. Meridional advection, mixing and friction are involved in the formation of fluid parcel swith PV anomalies in the lower part and below the pycnocline, north and south of the EUC, in the Gulf of Guinea. These parcels gradually merge and vertically align, forming nonlinear anticyclonic vortices that propagate westward, spreading and horizontally mixing their PV content by stirring filamentation and diffusion, up to 20◦W. When averaged over time, this creates regions of nearly homogeneous PV within zonal bands between 1.5◦ and 5◦S or N. This mean PV field is associated with westward and eastward zonal jets flanking the EUC with the homogeneous PV tongues corresponding to the westward currents, and the strong PV gradient regions at their edges corresponding to the eastward currents. Mesoscale vortices strongly modulate the mean fields explaining the high spatial and temporal variability of the jets.