Heavy metals can adversely affect neurodevelopment, immune function, and overall health during early childhood. However, few studies have evaluated heavy metal exposure in children. Therefore, we assessed urinary metal concentrations in Korean children and their association with allergic rhinitis. The study included 648 preschool children aged 3-5 years who participated in the Korean National Environmental Health Survey (KoNEHS, 2021-2023) Cycle 5. Urinary Hg was measured using a mercury analyzer, whereas V, Mn, Ni, Mo, Cd, Sb, Pb, and Cr were analyzed using inductively coupled plasma mass spectrometry. The geometric mean concentrations of Ni (3.33 μg/L), Mo (113 μg/L), and Sb (0.088 μg/L) were more than 1.5-fold higher than those reported in international biomonitoring surveys. Ni was positively correlated with Mo (r = 0.531) and Cd (r = 0.573). Urinary Ni concentrations differed significantly based on allergic rhinitis status (p = 0.006), whereas Mo showed a marginally significant association(p = 0.054). Logistic regression analysis showed that a 1-unit increase in log-transformed urinary Ni concentration was associated with a 37% increase in the odds of allergic rhinitis (OR = 1.37, 95% CI = 1.09-1.73). In the multivariable model including Ni, Cd, and Mo, the odds of allergic rhinitis increased by 34% (OR = 1.34, 95% CI: 1.02-1.76). After adjusting for sex, age, and ponderal index, the association remained statistically significant, with 35% increased odds ratio (OR = 1.35, 95% CI: 1.02-1.77). The association between urinary Ni concentration and allergic rhinitis was consistent across models. These findings support continued monitoring of heavy metal exposure and associated health effects in Korean children.