In paddy soils in the Mekong Delta, soil archaea emit substantial amounts of methane. Reproducing ground flux data using only satellite-observable explanatory variables is a highly transparent method for evaluating regional emissions. We hypothesized that PALSAR-2 (Phased Array type L-band Synthetic Aperture RADAR) can distinguish inundated soil from noninundated soil even if the soil is covered by rice plants. Then, we verified the reproducibility of the ground flux data with satellite-observable variables (soil inundation and cropping calendar) and with hierarchical Bayesian models. Furthermore, inundated/noninundated soils were classified with PALSAR-2. The model parameters were successfully converged using the Hamiltonian–Monte Carlo method. The cross-validation of PALSAR-2 land surface water coverage (LSWC) with several inundation indices of MODIS (Moderate Resolution Imaging Spectroradiometer) and AMSR-2 (Advanced Microwave Scanning Radiometer-2) data showed that (1) high PALSAR-2-LSWC values were detected even when MODIS and AMSR-2 inundation index values (MODIS-NDWI and AMSR-2-NDFI) were low and (2) low values of PALSAR-2-LSWC tended to be less frequently detected as the MODIS-NDWI and AMSR-2-NDFI increased. These findings indicate the potential of PALSAR-2 to detect inundated soils covered by rice plants even when MODIS and AMSR-2 cannot, and show the similarity between PALSAR-2-LSWC and the other two indices for nonvegetated areas.
17 January 2023 in Geo-spatial Information Science
Ongoing climate change has accelerated the outbreak and expansion of climate-sensitive infectious diseases such as dengue fever. Dengue fever will remain a threat until safe and effective vaccines and antiviral drugs have been developed, distributed, and administered on a global scale. By predicting the spatiotemporal distribution of dengue fever outbreaks, we can effectively implement dengue fever prevention and control. Our study aims to predict the spatiotemporal distribution of dengue fever outbreaks in Chinese Taiwan using a U-Net based encoder – decoder model with daily datasets of sea-surface temperature, rainfall, and shortwave radiation from Remote Sensing (RS) instruments and dengue fever case notification data. Although the prediction accuracy of the proposed model was low and the overlapping areas between the ground truth and pixelwise prediction were few, some of the pixels were located nearby the ground truth, suggesting that the application of RS data and deep learning may help to predict the spatiotemporal distribution of dengue fever outbreaks. With further improvements, the deep learning model might effectively learn a small amount of training data for a specific task.
Methane emissions from rice paddies account for over 11% of global atmospheric CH4, making water management practices such as Alternate Wetting and Drying (AWD) critical for climate change mitigation. Remote sensing offers an objective approach to monitoring AWD implementation and improving greenhouse gas estimation accuracy. This study investigates the backscattering mechanisms of L-band SAR for inundation/non-inundation classification in paddy fields using full-polarimetric ALOS-2 PALSAR-2 data. Field surveys and satellite observations were conducted in Ryugasaki (Ibaraki) and Sekikawa (Niigata), Japan, collecting 1360 ground samples during the 2024 growing season. Freeman–Durden decomposition was applied, and relationships with plant height and water level were analyzed. The results indicate that plant height strongly influences backscatter, with backscattering contributions from the surface decreasing beyond 70 cm, reducing classification accuracy. Random forest models can classify inundated and non-inundated fields with up to 88% accuracy when plant height is below 70 cm. However, when using this method, it is necessary to know the plant height. Volume scattering proved robust to incidence angle and observation direction, suggesting its potential for phenological monitoring. These findings highlight the effectiveness of L-band SAR for water management monitoring and the need for integrating crop height estimation and regional adaptation to enhance classification performance.
Schistosomiasis mekongi infection represents a public health concern in Laos and Cambodia. While both countries have made significant progress in disease control over the past few decades, eradication has not yet been achieved. Recently, several studies reported the application of loop-mediated isothermal amplification (LAMP) for detecting Schistosoma DNA in low-transmission settings. The objective of this study was to develop a LAMP assay for Schistosoma mekongi using a simple DNA extraction method. In particular, we evaluated the utility of the LAMP assay for detecting S. mekongi DNA in human stool and snail samples in endemic areas in Laos. We then used the LAMP assay results to develop a risk map for monitoring schistosomiasis mekongi and preventing epidemics. A total of 272 stool samples were collected from villagers on Khon Island in the southern part of Laos in 2016. DNA for LAMP assays was extracted via the hot-alkaline method. Following the Kato-Katz method, we determined that 0.4% (1/272) of the stool samples were positive for S. mekongi eggs, as opposed to 2.9% (8/272) for S. mekongi DNA based on the LAMP assays. Snail samples (n = 11,762) were annually collected along the riverside of Khon Island from 2016 to 2018. DNA was extracted from pooled snails as per the hot-alkaline method. The LAMP assay indicated that the prevalence of S. mekongi in snails was 0.26% in 2016, 0.08% in 2017, and less than 0.03% in 2018. Based on the LAMP assay results, a risk map for schistosomiasis with kernel density estimation was created, and the distribution of positive individuals and snails was consistent. In a subsequent survey of residents, schistosomiasis prevalence among villagers with latrines at home was lower than that among villagers without latrines. This is the first study to develop and evaluate a LAMP assay for S. mekongi detection in stools and snails. Our findings indicate that the LAMP assay is an effective method for monitoring pathogen prevalence and creating risk maps for schistosomiasis.
Since the 1970s, Earth-observing satellites collect increasingly detailed environmental information on land cover, meteorological conditions, environmental variables and air pollutants. This information spans the entire globe and its acquisition plays an important role in epidemiological analysis when in situ data are unavailable or spatially and/or temporally sparse. In this paper, we present the development of Japan Aerospace Exploration Agency’s (JAXA) Public-health Monitoring and Analysis Platform available from JAXA, a user-friendly, web-based system providing environmental data on shortwave radiation, rainfall, soil moisture, the normalized difference vegetation index, aerosol optical thickness, land surface temperature and altitude. This system has been designed so that users should be able to download and utilize data without the need for additional data processing. The website allows interactive exchange and users can request data for a specific geographic location and time using the information gained for epidemiological analysis.