This study presents a comprehensive analysis of sediment texture along with geochemical variation, potential sources, and ecological risk assessment of major elements and trace metals in the bottom sediments of Iranian territorial waters situated in the northeast Persian Gulf. To achieve this, diverse laboratory methods, GIS techniques, statistical analyses, and index analysis approaches were employed. Over 50% of the sediment particles are mud, while one-third are sand-sized particles, primarily composed of skeletal fragments. The sediment’s elements concentrations were ranked in descending order as Ca > Al > Fe > Sr > Mn > Ba > Cr > Ni > V > Zn > Cu > Pb > As > Co > Mo > Cd. Cluster analysis revealed strong correlations among Al-Ni-Cr-V, Cd-Cu-Zn-Pb, Ba-Fe, silt-clay, and Ca-Sr. Calcium and strontium showed extremely severe enrichment due to high content of carbonate matter. Arsenic and Mo were significantly enriched, while Ba, V, Co, Zn, and Cu demonstrated moderate enrichment. Nevertheless, all the sampling stations were classified as having zero to very low levels of contamination, indicating a low potential ecological risk. Arsenic emerged as the primary contributor to the ecological risk index. Notably, no strong correlation was found between As, Mo, and other elements, indicating that As and Mo likely originate from distinct sources.