Ozan Öktem

Dr. Ozan Öktem


Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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22 November 2017 in Inverse Problems
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Journal Article
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JAJonas Adler
Jonas Adler
OÖOzan Öktem
Ozan Öktem
We propose a partially learned approach for the solution of ill-posed inverse problems with not necessarily linear forward operators. The method builds on ideas from classical regularisation theory and recent advances in deep learning to perform learning while making use of prior information about the inverse problem encoded in the forward operator, noise model and a regularising functional. The method results in a gradient-like iterative scheme, where the ‘gradient’ component is learned using a convolutional network that includes the gradients of the data discrepancy and regulariser as input in each iteration. We present results of such a partially learned gradient scheme on a non-linear tomographic inversion problem with simulated data from both the Sheep-Logan phantom as well as a head CT. The outcome is compared against filtered backprojection and total variation reconstruction and the proposed method provides a 5.4 dB PSNR improvement over the total variation reconstruction while being significantly faster, giving reconstructions of 512 × 512 pixel images in about 0.4 s using a single graphics processing unit (GPU).

29 January 2018 in IEEE Transactions on Medical Imaging
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JAJonas Adler
Jonas Adler
OÖOzan Öktem
Ozan Öktem
We propose the Learned Primal-Dual algorithm for tomographic reconstruction. The algorithm accounts for a (possibly non-linear) forward operator in a deep neural network by unrolling a proximal primal-dual optimization method, but where the proximal operators have been replaced with convolutional neural networks. The algorithm is trained end-to-end, working directly from raw measured data and it does not depend on any initial reconstruction such as filtered back-projection (FBP). We compare performance of the proposed method on low dose computed tomography reconstruction against FBP, total variation (TV), and deep learning based post-processing of FBP. For the Shepp-Logan phantom we obtain > 6 dB PSNR improvement against all compared methods. For human phantoms the corresponding improvement is 6:6 dB over TV and 2:2 dB over learned post-processing along with a substantial improvement in the structural similarity index. Finally, our algorithm involves only ten forward-back-projection computations, making the method feasible for time critical clinical applications.

1 May 2019 in Acta Numerica
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SASimon Arridge
Simon Arridge
PMPeter Maass
Peter Maass
OÖOzan Öktem
Ozan Öktem
CSCarola-Bibiane Schönlieb
Carola-Bibiane Schönlieb
Recent research in inverse problems seeks to develop a mathematically coherent foundation for combining data-driven models, and in particular those based on deep learning, with domain-specific knowledge contained in physical–analytical models. The focus is on solving ill-posed inverse problems that are at the core of many challenging applications in the natural sciences, medicine and life sciences, as well as in engineering and industrial applications. This survey paper aims to give an account of some of the main contributions in data-driven inverse problems.

2 January 2023 in IEEE Signal Processing Magazine
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Journal Article
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SMSubhadip Mukherjee
Subhadip Mukherjee
AHAndreas Hauptmann
Andreas Hauptmann
OÖOzan Öktem
Ozan Öktem
MPMarcelo Pereyra
Marcelo Pereyra
CSCarola-Bibiane Schonlieb
Carola-Bibiane Schonlieb
In recent years, deep learning has achieved remarkable empirical success for image reconstruction. This has catalyzed an ongoing quest for the precise characterization of the correctness and reliability of data-driven methods in critical use cases, for instance, in medical imaging. Notwithstanding the excellent performance and efficacy of deep learning-based methods, concerns have been raised regarding the approaches’ stability, or lack thereof, with serious practical implications. Significant advances have been made in recent years to unravel the inner workings of data-driven image recovery methods, challenging their widely perceived black-box nature. In this article, we specify relevant notions of convergence for data-driven image reconstruction, which forms the basis of a survey of learned methods with mathematically rigorous reconstruction guarantees. An example that is highlighted is the role of input-convex neural networks (ICNNs), offering the possibility to combine the power of deep learning with classical convex regularization theory for devising methods that are provably convergent. This survey article is aimed at both methodological researchers seeking to advance the frontiers of our understanding of data-driven image reconstruction methods as well as practitioners by providing an accessible description of useful convergence concepts and by placing some of the existing empirical practices on a solid mathematical foundation.

1 June 2011 in Journal of Microscopy
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HRH. Rullgård
H. Rullgård
LÖL.-G. Öfverstedt
L.-G. Öfverstedt
SMS. Masich
S. Masich
BDB. Daneholt
B. Daneholt
OÖOzan Öktem
Ozan Öktem

27 April 2020 in IEEE Transactions on Computational Imaging
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Journal Article
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AHAndreas Hauptmann
Andreas Hauptmann
JAJonas Adler
Jonas Adler
SASimon Arridge
Simon Arridge
OÖOzan Öktem
Ozan Öktem
Model-based learned iterative reconstruction methods have recently been shown to outperform classical reconstruction algorithms. Applicability of these methods to large scale inverse problems is however limited by the available memory for training and extensive training times, the latter due to computationally expensive forward models. As a possible solution to these restrictions we propose a multi-scale learned iterative reconstruction scheme that computes iterates on discretisations of increasing resolution. This procedure does not only reduce memory requirements, it also considerably speeds up reconstruction and training times, but most importantly is scalable to large scale inverse problems with non-trivial forward operators, such as those that arise in many 3D tomographic applications. In particular, we propose a hybrid network that combines the multi-scale iterative approach with a particularly expressive network architecture which in combination exhibits excellent scalability in 3D. Applicability of the algorithm is demonstrated for 3D cone beam computed tomography from real measurement data of an organic phantom. Additionally, we examine scalability and reconstruction quality in comparison to established learned reconstruction methods in two dimensions for low dose computed tomography on human phantoms.