Recent advances in omics technologies have not been accompanied by equally efficient, cost-effective, and accurate phenotyping methods required to dissect the genetic architecture of complex traits. Even though high-throughput phenotyping platforms have been developed for controlled environments, field-based aerial and ground technologies have only been designed and deployed for short-stature crops. Therefore, we developed and tested Phenobot 1.0, an auto-steered and self-propelled field-based high-throughput phenotyping platform for tall dense canopy crops, such as sorghum (Sorghum bicolor). Phenobot 1.0 was equipped with laterally positioned and vertically stacked stereo RGB cameras. Images collected from 307 diverse sorghum lines were reconstructed in 3D for feature extraction. User interfaces were developed, and multiple algorithms were evaluated for their accuracy in estimating plant height and stem diameter. Tested feature extraction methods included the following: (1) User-interactive Individual Plant Height Extraction (UsIn-PHe) based on dense stereo three-dimensional reconstruction; (2) Automatic Hedge-based Plant Height Extraction (Auto-PHe) based on dense stereo 3D reconstruction; (3) User-interactive Dense Stereo Matching Stem Diameter Extraction; and (4) User-interactive Image Patch Stereo Matching Stem Diameter Extraction (IPaS-Di). Comparative genome-wide association analysis and ground-truth validation demonstrated that both UsIn-PHe and Auto-PHe were accurate methods to estimate plant height, while Auto-PHe had the additional advantage of being a completely automated process. For stem diameter, IPaS-Di generated the most accurate estimates of this biomass-related architectural trait. In summary, our technology was proven robust to obtain ground-based high-throughput plant architecture parameters of sorghum, a tall and densely planted crop species.

Robotic weeding enables weed control near or within crop rows automatically, precisely and effectively. A computer‐vision system was developed for detecting crop plants at different growth stages for robotic weed control. Fusion of color images and depth images was investigated as a means of enhancing the detection accuracy of crop plants under conditions of high weed population. In‐field images of broccoli and lettuce were acquired 3–27 days after transplanting with a Kinect v2 sensor. The image processing pipeline included data preprocessing, vegetation pixel segmentation, plant extraction, feature extraction, feature‐based localization refinement, and crop plant classification. For the detection of broccoli and lettuce, the color‐depth fusion algorithm produced high true‐positive detection rates (91.7% and 90.8%, respectively) and low average false discovery rates (1.1% and 4.0%, respectively). Mean absolute localization errors of the crop plant stems were 26.8 and 7.4 mm for broccoli and lettuce, respectively. The fusion of color and depth was proved beneficial to the segmentation of crop plants from background, which improved the average segmentation success rates from 87.2% (depth‐based) and 76.4% (color‐based) to 96.6% for broccoli, and from 74.2% (depth‐based) and 81.2% (color‐based) to 92.4% for lettuce, respectively. The fusion‐based algorithm had reduced performance in detecting crop plants at early growth stages.