Habitat shifts that occur during the life cycles of marine fishes influence population connectivity and structure. A generalized additive modeling approach was used to characterize relationships between environmental variables and the relative abundance of red snapper Lutjanus campechanus over unconsolidated substrate on the continental shelf (<150 m) of the U.S. Gulf of Mexico (GoM) at three different life stages: juvenile (age-0, 300 mm FL). Fisheries independent data (2008–2014) were used to develop separate models for both the eastern and western GoM, and final models were used to predict the relative availability of suitable habitat for each life stage across the two regions. Predictor variables included in final models varied by age class and region, with depth, dissolved oxygen, longitude, and distance to artificial structure common to most models. Depth was among the most influential variables in all models, and preferred depth increased with increasing size/age. Regional differences in fish-habitat relationships were also observed, as relative abundance of larger red snapper over unconsolidated substrates was more closely linked to artificial structure in the eastern GoM. The location of predicted high quality habitat for juvenile red snapper was greatest on the inner Texas shelf and a smaller area east of the Mississippi River Delta, suggesting these two areas may represent important nursery grounds for the respective regions. Clear ontogenetic shifts in the spatial distribution of predicted high quality habitat were evident in both the eastern (expansion from west to east with age) and western (shift from inshore to offshore) GoM. Given the unique population dynamics between the eastern and western GoM, improving our understanding of spatial and temporal variability in habitat quality may be important to maintaining connectivity between juvenile and adult habitats, and may enhance recovery and management of red snapper stocks in the GoM.

Geochemical chronologies were constructed from otoliths of adult Pacific bluefin tuna (PBT) to investigate the timing of age-specific egress of juveniles from coastal nurseries in the East China Sea or Sea of Japan to offshore waters of the Pacific Ocean. Element:Ca chronologies were developed for otolith Li, Mg, Mn, Zn, Sr, and Ba, and our assessment focused on the section of the otolith corresponding to the age-0 to age-1 + interval. Next, we applied a common time-series approach to geochemical profiles to identify divergences presumably linked to inshore-offshore migrations. Conspicuous geochemical shifts were detected during the juvenile interval for Mg:Ca, Mn:Ca, and Sr:Ca that were indicative of coastal-offshore transitions or egress generally occurring for individuals approximately 4–6 mo. old, with later departures (6 mo. or older) linked to overwintering being more limited. Changepoints in otolith Ba:Ca profiles were most common in the early age-1 period (ca. 12–16 mo.) and appear associated with entry into upwelling areas such as the California Current Large Marine Ecosystem following trans-Pacific migrations. Natal origin of PBT was also predicted using the early life portion of geochemical profile in relation to a baseline sample comprised of age-0 PBT from the two primary spawning areas in the East China Sea and Sea of Japan. Mixed-stock analysis indicated that the majority (66%) of adult PBT in our sample originated from the East China Sea, but individuals of Sea of Japan origin were also detected in the Ryukyu Archipelago.

Alterations to the functions and connectivity of mangrove–seagrass–patch reef (MSP) seascapes have the potential to impact the survival, foraging activities, and movement of reef-dependent invertebrates (e.g., crabs and shrimp) and fishes. In the current study, we examined carbon flow in the Guánica Biosphere Reserve in southwestern Puerto Rico using pigment analysis of particulate organic matter and stable isotope analysis of carbon (δ¹³C) and nitrogen (δ¹⁵N) in flora and fauna. Several lines of evidence pointed to N₂ fixers (cyanobacteria) being important for fueling primary productivity in this oligotrophic ecosystem including low (<0.7 µg L⁻¹) chlorophyll, prevalence of cyanobacteria based on pigment signatures, and the isotope signatures of seagrass and red mangrove leaf tissue (enriched δ¹⁵N values) and consumers (depleted δ¹⁵N values). Food web mixing models based on stable isotopes (δ¹³C and δ¹⁵N) revealed that multiple producers (phytoplankton, benthic microalgae, seagrasses, etc.) contributed organic matter to the consumers (zooplankton, invertebrates, and fishes) in the MSP seascape at the center of the reserve. Contribution estimates for common benthic invertebrates (crabs and shrimp) were taxon-specific, and the highest input was generally linked to particulate organic matter (POM) and benthic microalgae (BMA)/seagrass producer categories, although meaningful mangrove contribution was observed for some taxa. Similarly, contribution estimates for fishes were highest for POM and BMA/seagrass, with the latter producer category being more important for species known to migrate from mangroves or patch reefs to seagrass beds at night (bluestriped grunt, French grunt, and white grunt). Although all fish investigated were observed in mangrove prop-root habitats, input of organic matter from mangroves to these consumers was typically limited for most of the species examined. Understanding these complex seascapes contributes to our understanding of the ecology of these vital ecosystems.

Offshore coral reefs in the Gulf of Mexico (GOM) are unique model systems for examining the mechanisms structuring reef fish communities due to their substantial geographic isolation, and the presence of replicate experimental units of both low (mid-shelf) and high coral diversity (shelf-edge) reefs. Here, we examined the species assemblage structure of juvenile and adult fishes at two mid-shelf reefs (Sonnier and Stetson Bank) and two shelf-edge reefs (East and West Flower Garden Banks) in the northwestern GOM to evaluate the relative importance of habitat (i.e., coral diversity) vs. recruitment in structuring resident fish assemblages. Visual reef fish surveys (n = 400) were conducted at the four coral reefs during two seasons, spring-early summer and late summer-fall in 2009 and 2010. Two depth zones were surveyed at each reef, representing the reef crest (15–23 m depth) and upper slope (23–30 m depth) habitats. Seasonal variability in recruitment to both mid-shelf and shelf-edge reefs was observed, with higher mean juvenile density and diversity (H′) observed during the late season at all reefs in 2009 and all but Stetson in 2010, supporting an early fall recruitment peak. Likewise, considerable inter-annual variability in juvenile recruitment was observed, with significantly lower juvenile density and H′ observed at mid-shelf reefs in 2010 relative to 2009. Species diversity was strongly linked to coral diversity, with greater reef fish diversity consistently observed at shelf-edge relative to mid-shelf reefs. Observed differences in the composition of juvenile and adult assemblages at mid-shelf reefs suggest that reef fish communities at these reefs were more strongly influenced by post-settlement processes (e.g., juvenile mortality) than shelf-edge reefs, which may be a function of several limiting factors (e.g., predation, coral diversity, water quality). Results indicate that reef fish assemblages associated with mid-shelf and shelf-edge reefs in the northwestern GOM may have sufficient stabilizing mechanisms in place to facilitate recovery from anomalous recruitment events. The strong, reef type-specific differences in assemblage composition observed throughout the study indicate that mid-shelf and shelf-edge coral reefs may fill different functional roles for demersal fishes in the northwestern GOM.

Coastal restoration projects to mitigate environmental impacts have increased global demand for sand resources. Unfortunately, these resources are often extracted from sand/shell banks on the inner continental shelf, resulting in significant alteration or loss of low‐relief reefs in coastal oceans. Experimental reefs (oyster shell, limestone rubble, composite) were deployed in the western Gulf of Mexico to assess their potential value as nurseries for newly settled reef fishes. Occurrence, abundance, and species richness of juvenile fishes were significantly higher on all three types of low‐relief reefs compared with unconsolidated sediment. Moreover, reefs served as nursery habitat for a range of reef fish taxa (angelfishes, grunts, sea basses, snappers, and triggerfishes). Red snapper (Lutjanus campechanus) was the dominant species present on all experimental reefs (100% occurrence), and mean density of this species was markedly higher on each of the three low‐relief reefs (>40.0 individuals/reef) relative to comparable areas over unconsolidated sediment (0.2 individuals). Our results suggest creation or restoration of structurally complex habitat on the inner shelf has the potential to markedly increase early life survival and expedite the recovery of exploited reef fish populations, and therefore may represent a critical conservation tool for increasing recruitment and maintaining reef fish diversity.

Natural geochemical markers in the otolith of yellowfin tuna (Thunnus albacares) were used to establish nursery-specific signatures for investigating the origin of fish captured in the western Atlantic Ocean (WAO). Two classes of chemical markers (trace elements, stable isotopes) were used to first establish nursery-specific signatures of age-0 yellowfin tuna from four primary production zones in the Atlantic Ocean: Gulf of Mexico, Caribbean Sea, Cape Verde, and Gulf of Guinea. Next, mixture and individual assignment methods were applied to predict the origin of sub-adult and adult yellowfin tuna from two regions in the WAO (Gulf of Mexico, Mid Atlantic Bight) by relating otolith core signatures (corresponding to age-0 period) to baseline signatures of age-0 fish from each nursery. Significant numbers of migrants from Caribbean Sea and eastern Atlantic Ocean (EAO) production zones (Gulf of Guinea, Cape Verde) were detected in the WAO, suggesting that fisheries in this region were subsidized by outside spawning/nursery areas. Contributions from local production (Gulf of Mexico) were also evident in samples from both WAO fisheries, but highly variable from year to year. High levels of mixing by yellowfin tuna from the different production zones and pronounced interannual trends in nursery-specific contribution rates in the WAO emphasize the complex and dynamic nature of this species’ stock structure and population connectivity. Given that geographic shifts in distribution across national or political boundaries leads to governance and management challenges, this study highlights the need for temporally resolved estimates of nursery origin to refine assessment models and promote the sustainable harvest of this species.