Ayse Kalkanci

Prof. Dr. Ayse Kalkanci

orcid

Research Focus & Metrics

Academic Career Length

24Years (2003-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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15 December 2010 in Current Eye Research
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Journal Article
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AKAyse Kalkanci
Ayse Kalkanci
SOSengul Ozdek
Sengul Ozdek
Purpose: Microbiology, clinical perspective of ocular fungal infections, and the experimental models were overviewed. Methods: Review of published studies were evaluated and personal experience was mentioned. In this review, clinical features of keratitis and endogenous and exogenous endophthalmitis are also mentioned, but this article mainly focused on laboratory diagnosis and the experimental models of ophthalmic mycoses. Results: Fungal infections were discussed according to the anatomical part of the eye involved in the disease. Trauma is the most important predisposing cause; the species of Fusarium, Aspergillus, and Candida are the most frequently isolated organisms. Laboratory methods, such as culture, remains the cornerstone of diagnosis; direct microscopic detection of fungal structures in ocular samples permits a rapid presumptive diagnosis. New approaches, such as serological and molecular methods, have been widely used in recent years. A variety of antifungals have been evaluated in the therapy of this condition. Experimental models would facilitate investigations exploring the pathophysiology, cell biology, genetics, immunology, and therapy of this disease. Conclusions: Fungal infections of the eye continue to be an important cause of ocular morbidity, particularly in the developing world. Understanding ocular infections will improve the outcome of this condition.

1 March 2018 in Journal of Medical Mycology
Verified
Journal Article
Closed access
IKİ. Kara
İ. Kara
FYF. Yıldırım
F. Yıldırım
ÖÖÖ. Özgen
Ö. Özgen
SES. Erganiş
S. Erganiş
MAM. Aydoğdu
M. Aydoğdu
AKAyse Kalkanci
Ayse Kalkanci

30 October 2020 in PLOS ONE
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Journal Article
Open access
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DTDuygu Tecer
Duygu Tecer
FGFeride Gogus
Feride Gogus
AKAyse Kalkanci
Ayse Kalkanci
MEMerve Erdogan
Merve Erdogan
MHMurat Hasanreisoglu
Murat Hasanreisoglu
KDKadir Serdar Diker
Kadir Serdar Diker
Behçet’s Syndrome (BS) is a multisystem vasculitis with various clinical manifestations. Pathogenesis is unclear, but studies have shown genetic factors, innate immunity and autoinflammation to have an important role in the disease course. Diversity in the microbial community of gut microbiota may significantly contribute to the activation of the innate immune system. The clinical features of BS present themselves in clusters and each cluster may be a consequence of different disease mechanisms. For this reason we aimed to investigate the gut microbiota of BS patients with uveitis. In addition to healthy controls, we have aimed to compare the gut microbiota of BS with that of Familial Mediterranean Fever (FMF) and Crohn’s Disease (CD) as both diseases have innate and autoinflammatory features in their pathogenesis. Seven patients with BS, 12 patients with FMF, 9 patients with CD and 16 healthy controls (HC) were included in the study. Total genomic DNAs were isolated from fecal samples of the patients. Partial 16S rRNA gene was sequenced using the PGM Ion Torrent (Thermo Fisher Scientific, Waltham, MA, USA) for microbiota analysis. Statistical analysis showed that significant differences were detected on the microbial community of four groups. Succinivibrionaceae is dominant and the signature family, whereas Bacteroides was absent in BS patients.

4 November 2024 in BMC Microbiology
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Journal Article
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SESidre ERGANİŞ
Sidre ERGANİŞ
AOAli Ozturk
Ali Ozturk
SUSema Turan Uzuntas
Sema Turan Uzuntas
FKFusun Kirca
Fusun Kirca
ADAlper Dogan
Alper Dogan
AKAyse Kalkanci
Ayse Kalkanci
Candida auris, a multidrug-resistant yeast, poses significant challenges in healthcare settings due to its ability to form biofilms and resistance to common disinfectants. Understanding its susceptibility to biocides used in hospital disinfection practices is crucial for infection control. We investigated the biocide sensitivity of eight clinical C. auris strains from different patients and one reference strain (CDC B11903) using the biocide activity tests. Species identification was confirmed through MALDI-TOF MS, while clade differentiation and phylogenetic classification were determined via whole-genome sequencing. Biofilm formation was assessed using the MTT assay. Antifungal susceptibilities were tested according to CLSI standards. The effectiveness of biocides, including chlorine, chlorhexidine, and benzalkonium chloride, was evaluated through broth microdilution following CLSI standards and quantitative suspension and carrier tests, following EN standards. All clinical strains were identified as clade 1, and the reference strain as clade 4, with all exhibiting biofilm formation. Clade 1 strains showed resistance to fluconazole, with MIC values ranging from 8 to 32 µg/ml, while being susceptible to other antifungals. Broth microdilution MIC assays for biocides demonstrated that all strains exhibited resistance to benzalkonium chloride. Chlorine and chlorhexidine showed variable efficacy, dependent on concentration and environmental cleanliness. Alcohol-based hand sanitizers demonstrated effectiveness against C. auris from the first minute of application. The study highlights the variable susceptibility of C.auris to different biocides, underscoring the challenge in eradicating this pathogen from healthcare environments. Our findings advocate for the careful selection of disinfectants in hospital settings, emphasizing the need for high-concentration chlorine and chlorhexidine solutions to combat C. auris, even in especially clean environments.

8 May 2013 in Journal of Obstetrics and Gynaecology
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Journal Article
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AKAyse Kalkanci
Ayse Kalkanci
AGA. B. Güzel
A. B. Güzel
IJI. I. K. Jabban
I. I. K. Jabban
Merve AydinMerve Aydin
Merve Aydin
Macit IlkitMacit Ilkit
Macit Ilkit
SKS. Kuştimur
S. Kuştimur
Vulvovaginal candidosis (VVC) is a major problem for the female population worldwide, and considerably little is known about the difference between acute VVC (AVVC) and recurrent VVC (RVVC). We investigated the susceptibility to six antifungal agents and boric acid of Candida spp. isolated from vaginal cultures, as described in the CLSI document M27-A3, from 228 non-pregnant sexually active women (aged 18–49 years), and the virulence factors of these isolates. The isolates were derived from patients with AVVC (n = 64), those with RVVC (n = 125) and those without signs or symptoms (n = 39). In total, C. albicans was the most commonly isolated species (50%), followed by C. glabrata (35.5%) and other Candida spp. (14.5%). We observed slightly different minimum inhibitory concentration (MICs) for various antifungals among the species and study groups that could have potential therapeutic benefits for the treatment. Analysis of the virulence factors revealed that haemolytic activity is not involved in VVC pathogenesis but that germ-tube formation, adhesion to VECs, and proteinase and phospholipase production may be important in the pathogenesis of VVC.

16 August 2018 in TURKISH JOURNAL OF MEDICAL SCIENCES
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Journal Article
Open access
ÖTÖzlem Güzel Tunccan
Özlem Güzel Tunccan
AKAyse Kalkanci
Ayse Kalkanci
AŞAyça Şahin
Ayça Şahin
OAOlkar Abdulmajed
Olkar Abdulmajed
MEMerve Erdoğan
Merve Erdoğan
KÇKayhan Çağlar
Kayhan Çağlar
This study was designed to evaluate the effect of antimicrobial photodynamic treatment (APDT) in a biofilm model using combinations of various dyes (rose bengal, riboflavin, and methylene blue) as photosensitizers and light sources (LED and UVA) against staphylococcal and candidal biofilms. Sterile microtiter plates were used for the development and quantification of the biofilms. APDT was carried out using combinations of the light sources and dyes. The percentage of the growth inhibition was then calculated using a spectrophotometer. The broth media in the wells were aspirated, wells were stained with crystal violet, and optical density values were measured spectrophotometrically. SEM analysis of the impact of APDT on bacterial and fungal biofilms was also performed. The experiments showed that the most efficacious combination was red LED + methylene blue against both staphylococcal and candidal biofilms. A marked inhibition (45.4%) was detected on both C. albicans and C. parapsilosis biofilms. Red LED + methylene blue was also effective on S. aureus and S. epidermidis biofilms. SEM images suggested that the number of adherent cells and biofilm mass were markedly reduced after APDT treatment. Although the results of this study indicated the in vitro efficacy of APDT, it might also be a promising technique for the control of biofilm growth within intravenous catheters.