To explore the differences in the fine root characteristics and rhizosphere environment of male and female Idesia polycarpa Maxim at different stages, 7-year-old male and female I. polycarpa were used as plant materials. The fine root characteristics were measured with a root scanner, and rhizosphere soil was collected at the flowering stage (May), fruit accumulation stage (July), and fruit maturity stage (October). In addition, this study analyzed the soil nutrient characteristics of these conditions at different stages. At the same time, Illumine high-throughput sequencing technology and gas chromatography–tandem mass spectrometry (GC–MS) technology were used to analyze the rhizosphere microbes and metabolites of male and female plants at different stages. The results showed that the total root length, surface area, total volume, root tip number, and total average diameter of the fine root of female plants were larger than those of male plants, and the difference reached its maximum in the fruit material accumulation stage. Total carbon (TC) and total nitrogen (TN) content in the rhizosphere soil of male and female plants significantly differed over multiple stages, while available soil nitrogen and potassium content significantly differed during fruit ripening. The rhizosphere microbial composition of male and female plants was similar, and the dominant bacteria in the rhizosphere soil of each stage were Proteobacteria, Acidobacteria, Ascomycota, and Mortierellomycota. The relative abundance of Bacillus, Arthrobacter, Volutella, and Neocosmospora in rhizosphere soil at different stages differed between male and female plants. Combined with the OPLS-DA model and database retrieval, 29 significantly different metabolites, most of which were carbohydrates, were detected in the rhizosphere soil of male and female plants. Moreover, there were more significant metabolites in the rhizosphere soil at the flowering stage than in the fruit ripening stage. Through RDA analysis, available potassium (AK), Pedomicrobium, Chaetomium, and Glucose 1 had the greatest influence on fine root traits of I. polycarpa. The results indicated that the fine root traits were negatively correlated with AK and rhizosphere metabolites. Moreover, positive correlations were found with rhizosphere microorganism traits. The above results laid a foundation for the field management of I. polycarpa and the screening and application of rhizosphere growth-promoting bacteria resources.

Idesia polycarpa is a dioecious tree; in field surveys, there are rare sex conversions in I. polycarpa individuals with bisexual flowers. To identify the molecular mechanisms underlying sex conversion in this species, an integrative analysis of the proteome and transcriptome profiles of I. polycarpa male and bisexual flowers at key developmental stages was conducted in this study using isobaric tags for relative and absolute quantification and RNA-seq technology. A total of 15,003 proteins were identified; the differentially expressed proteins (DEPs) were enriched in metabolic pathways, biosynthesis of secondary metabolites, and flavonoid metabolism pathways in all comparison groups. A total of 290,442 unigenes were obtained; these were compared with seven databases, revealing 196,366 annotated unigenes. In general, the expression of proteins and genes tended to be positively correlated, with Spearman correlation coefficients in the ranges of 0.152–0.262 (all genes and all proteins) and 0.497–0.778 (DEPs and DEGs). The integrative analysis of DEPs and DEGs between male and bisexual flowers revealed that the most significantly enriched pathways were flavonoid pathways, metabolic pathways, and the biosynthesis of secondary metabolites. Finally, four co-expressed proteins and transcripts and one gene associated with the flavonoid biosynthesis pathway were screened out. The proteins identified were p-coumaroyl shikimate 3′-hydroxylase, and shikimate/quinate hydroxycinnamoyl transferase, and the gene was caffeoyl-CoA O-methyltransferase. The analysis has revealed key potential proteins and genes involved in sex conversion at the molecular level and has provided a basis for future investigations of artificial regulation of sex differentiation in I. polycarpa.

Aroma is an appreciated fruit property, and volatile flavor plays a key role in determining the perception and acceptability of fruit products by consumers. However, metabolite composition that contributes to the aroma in fruit quality is unclear. In this study, we detected 645 volatile organic compounds of ‘Panguxiang’ pear in total, including esters, alcohols, alkanes, acids, ketones, terpenes and aldehydes. In addition, the levels of sugars, organic acids and amino acids in ‘Panguxiang’ pear were investigated using high-performance liquid chromatography. In the aroma generation, glucose was the dominant sugar, followed by sucrose and fructose. At the development transferred storage stage, organic acids may not participate in aroma biosynthesis. The amino acids that may play potential roles in aroma substance synthesis are tyrosine and glycine. Through metabolomics analysis at different stages of ‘Panguxiang’ pear, we selected 65 key metabolites that were significantly related to glucose, sucrose, fructose, tyrosine and glycine, according to the trends of metabolite concentrations. Finally, we chose eight candidate metabolites (e.g., three esters, two aldehydes, one alcohol, one acid and one ketone) as the representative aroma substances of the ‘Panguxiang’ pear compared to the metabolome of the ‘Korla’ at stage Z5. Data and results from this study can help better understand the variations in aroma quality among pear varieties and assist in developing breeding programs for pear varieties.