Saeideh Nakhaei-Rad

Dr. Saeideh Nakhaei-Rad

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Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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12 October 2015 in Nature Genetics
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ACAurélie Caye
Aurélie Caye
MSMarion Strullu
Marion Strullu
FGFabien Guidez
Fabien Guidez
BCBruno Cassinat
Bruno Cassinat
SGSteven Gazal
Steven Gazal
HCHélène Cavé
Hélène Cavé

4 July 2023 in Cells
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Journal Article
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FBFarhad Bazgir
Farhad Bazgir
JNJulia Nau
Julia Nau
Saeideh Nakhaei-RadSaeideh Nakhaei-Rad
Saeideh Nakhaei-Rad
Ehsan AminEhsan Amin
Ehsan Amin
MWMatthew Wolf
Matthew Wolf
Mohammad AhmadianMohammad Ahmadian
Mohammad Ahmadian
Pathological cardiac hypertrophy is a key risk factor for the development of heart failure and predisposes individuals to cardiac arrhythmia and sudden death. While physiological cardiac hypertrophy is adaptive, hypertrophy resulting from conditions comprising hypertension, aortic stenosis, or genetic mutations, such as hypertrophic cardiomyopathy, is maladaptive. Here, we highlight the essential role and reciprocal interactions involving both cardiomyocytes and non-myocardial cells in response to pathological conditions. Prolonged cardiovascular stress causes cardiomyocytes and non-myocardial cells to enter an activated state releasing numerous pro-hypertrophic, pro-fibrotic, and pro-inflammatory mediators such as vasoactive hormones, growth factors, and cytokines, i.e., commencing signaling events that collectively cause cardiac hypertrophy. Fibrotic remodeling is mediated by cardiac fibroblasts as the central players, but also endothelial cells and resident and infiltrating immune cells enhance these processes. Many of these hypertrophic mediators are now being integrated into computational models that provide system-level insights and will help to translate our knowledge into new pharmacological targets. This perspective article summarizes the last decades’ advances in cardiac hypertrophy research and discusses the herein-involved complex myocardial microenvironment and signaling components.

9 December 2016 in PLOS ONE
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HNHossein Nakhaeizadeh
Hossein Nakhaeizadeh
Ehsan AminEhsan Amin
Ehsan Amin
Saeideh Nakhaei-RadSaeideh Nakhaei-Rad
Saeideh Nakhaei-Rad
RDRadovan Dvorsky
Radovan Dvorsky
Mohammad AhmadianMohammad Ahmadian
Mohammad Ahmadian
RAS effectors specifically interact with the GTP-bound form of RAS in response to extracellular signals and link them to downstream signaling pathways. The molecular nature of effector interaction by RAS is well-studied but yet still incompletely understood in a comprehensive and systematic way. Here, structure-function relationships in the interaction between different RAS proteins and various effectors were investigated in detail by combining our in vitro data with in silico data. Equilibrium dissociation constants were determined for the binding of HRAS, KRAS, NRAS, RRAS1 and RRAS2 to both the RAS binding (RB) domain of CRAF and PI3Kα, and the RAS association (RA) domain of RASSF5, RALGDS and PLCε, respectively, using fluorescence polarization. An interaction matrix, constructed on the basis of available crystal structures, allowed identification of hotspots as critical determinants for RAS-effector interaction. New insights provided by this study are the dissection of the identified hotspots in five distinct regions (R1 to R5) in spite of high sequence variability not only between, but also within, RB/RA domain-containing effectors proteins. Finally, we propose that intermolecular β-sheet interaction in R1 is a central recognition region while R3 may determine specific contacts of RAS versus RRAS isoforms with effectors.

19 February 2018 in Critical Reviews in Biochemistry and Molecular Biology
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Saeideh Nakhaei-RadSaeideh Nakhaei-Rad
Saeideh Nakhaei-Rad
FHFereshteh Haghighi
Fereshteh Haghighi
PNParivash Nouri
Parivash Nouri
SASoheila Rezaei Adariani
Soheila Rezaei Adariani
JLJana Lissy
Jana Lissy
MAMohammad Reza Ahmadian
Mohammad Reza Ahmadian

11 June 2020 in The FEBS Journal
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MTMohamed S. Taha
Mohamed S. Taha
FHFereshteh Haghighi
Fereshteh Haghighi
ASAnja Stefanski
Anja Stefanski
Saeideh Nakhaei-RadSaeideh Nakhaei-Rad
Saeideh Nakhaei-Rad
NJNeda S. Kazemein Jasemi
Neda S. Kazemein Jasemi
Mohammad AhmadianMohammad Ahmadian
Mohammad Ahmadian
Silencing of the fragile X mental retardation 1 (FMR1) gene and consequently lack of synthesis of FMR protein (FMRP) are associated with fragile X syndrome, which is one of the most prevalent inherited intellectual disabilities, with additional roles in increased viral infection, liver disease, and reduced cancer risk. FMRP plays critical roles in chromatin dynamics, RNA binding, mRNA transport, and mRNA translation. However, the underlying molecular mechanisms, including the (sub)cellular FMRP protein networks, remain elusive. Here, we employed affinity pull‐down and quantitative LC‐MS/MS analyses with FMRP. We identified known and novel candidate FMRP‐binding proteins as well as protein complexes. FMRP interacted with 180 proteins, 28 of which interacted with its N terminus. Interaction with the C terminus of FMRP was observed for 102 proteins, and 48 proteins interacted with both termini. This FMRP interactome comprises known FMRP‐binding proteins, including the ribosomal proteins FXR1P, NUFIP2, Caprin‐1, and numerous novel FMRP candidate interacting proteins that localize to different subcellular compartments, including CARF, LARP1, LEO1, NOG2, G3BP1, NONO, NPM1, SKIP, SND1, SQSTM1, and TRIM28. Our data considerably expand the protein and RNA interaction networks of FMRP, which thereby suggest that, in addition to its known functions, FMRP participates in transcription, RNA metabolism, ribonucleoprotein stress granule formation, translation, DNA damage response, chromatin dynamics, cell cycle regulation, ribosome biogenesis, miRNA biogenesis, and mitochondrial organization. Thus, FMRP seems associated with multiple cellular processes both under normal and cell stress conditions in neuronal as well as non‐neuronal cell types, as exemplified by its role in the formation of stress granules.

5 December 2018 in Cell Communication and Signaling
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FHFereshteh Haghighi
Fereshteh Haghighi
JDJulia Dahlmann
Julia Dahlmann
Saeideh Nakhaei-RadSaeideh Nakhaei-Rad
Saeideh Nakhaei-Rad
ALAlexander Lang
Alexander Lang
IKIngo Kutschka
Ingo Kutschka
Mohammad AhmadianMohammad Ahmadian
Mohammad Ahmadian
Human pluripotent stem cells (PSCs) open new windows for basic research and regenerative medicine due to their remarkable properties, i.e. their ability to self-renew indefinitely and being pluripotent. There are different, conflicting data related to the role of basic fibroblast growth factor (bFGF) in intracellular signal transduction and the regulation of pluripotency of PSCs. Here, we investigated the effect of bFGF and its downstream pathways in pluripotent vs. differentiated human induced (hi) PSCs. bFGF downstream signaling pathways were investigated in long-term culture of hiPSCs from pluripotent to differentiated state (withdrawing bFGF) using immunoblotting, immunocytochemistry and qPCR. Subcellular distribution of signaling components were investigated by simple fractionation and immunoblotting upon bFGF stimulation. Finally, RAS activity and RAS isoforms were studied using RAS assays both after short- and long-term culture in response to bFGF stimulation. Our results revealed that hiPSCs were differentiated into the ectoderm lineage upon withdrawing bFGF as an essential pluripotency mediator. Pluripotency markers OCT4, SOX2 and NANOG were downregulated, following a drastic decrease in MAPK pathway activity levels. Notably, a remarkable increase in phosphorylation levels of p38 and JAK/STAT3 was observed in differentiated hiPSCs, while the PI3K/AKT and JNK pathways remained active during differentiation. Our data further indicate that among the RAS paralogs, NRAS predominantly activates the MAPK pathway in hiPSCs. Collectively, the MAPK pathway appears to be the prime signaling pathway downstream of bFGF for maintaining pluripotency in hiPSCs and among the MAPK pathways, the activity of NRAS-RAF-MEK-ERK is decreased during differentiation, whereas p38 is activated and JNK remains constant.