Lili Geng

Dr. Lili Geng

orcid

Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 April 2019 in GigaScience
Verified
Journal Article
Open access
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KWKui Wang
Kui Wang
PLPengpeng Li
Pengpeng Li
YGYongyang Gao
Yongyang Gao
CLChunqin Liu
Chunqin Liu
QWQinglei Wang
Qinglei Wang
Changlong ShuChanglong Shu
Changlong Shu
Protaetia brevitarsis, commonly known as the white-spotted flower chafer, is an important Scarabaeidae insect that is distributed in most Asian countries. Recently, research on the insect's harmfulness to crops, usefulness in agricultural waste utilization, edibility, medicinal value, and usability in insect immunology has provided sufficient impetus to demonstrate the need for a detailed study of its biology. Herein, we sequenced the whole genome of this species to improve our understanding and study of P. brevitarsis. We developed a highly reliable genome resource for P. brevitarsis (Lewis, 1879; Coleoptera: Cetoniinae) using Illumina and PacBio sequencing platforms. A total of 135.75 gigabases (Gb) was generated, providing 150-fold coverage based on the 810-megabases (Mb) estimated genome size. The assembled P. brevitarsis genome was 751 Mb (including the scaffolds longer than 2 kilobases (kb)) with 327 scaffolds, and the N50 length of the assembly was 2.94 Mb. A total of 34,110 (22,229 in scaffolds and 11,881 located in alleles) genes were identified using Evidence Modeler, which was based on the gene prediction results obtained from 3 different methods (ab initio, RNA sequencing based, and known gene based). We assembled a high-quality P. brevitarsis genome, which will not only provide insight into the biology of the species but also provide a wealth of information that will inform researchers on the evolution, control, and utilization of P. brevitarsis.

1 June 2018 in Microbiological Research
Verified
Journal Article
Closed access
LGLili Geng
Lili Geng
GSGao-Xiang Shao
Gao-Xiang Shao
BRBen Raymond
Ben Raymond
MWMei-Ling Wang
Mei-Ling Wang
XSXiao-Xiao Sun
Xiao-Xiao Sun
JZJie Zhang
Jie Zhang

16 September 2014 in Plant and Cell Physiology
Verified
Journal Article
Open access
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LGLili Geng
Lili Geng
XDXiaohong Duan
Xiaohong Duan
CLChun Liang
Chun Liang
Changlong ShuChanglong Shu
Changlong Shu
FSFuping Song
Fuping Song
JZJie Zhang
Jie Zhang
Peanut (Arachis hypogaea L.), one of the most important oil legumes in the world, is heavily damaged by white grubs. Tissue-specific promoters are needed to incorporate insect resistance genes into peanut by genetic transformation to control the subterranean pests. Transcriptome sequencing is the most effective way to analyze differential gene expression in this non-model species and contribute to promoter cloning. The transcriptomes of the roots, seeds and leaves of peanut were sequenced using Illumina technology. A simple digital expression profile was established based on number of transcripts per million clean tags (TPM) from different tissues. Subsequently, 584 root-specific candidate transcript assembly contigs (TACs) and 316 seed-specific candidate TACs were identified. Among these candidate TACs, 55.3% were root-specific and 64.6% were seed-specific by semi-quantitative RT-PCR analysis. Moreover, the consistency of semi-quantitative RT-PCR with the simple digital expression profile was correlated with the length and TPM value of TACs. The results of gene ontology showed that some root-specific TACs are involved in stress resistance and respond to auxin stimulus, whereas, seed-specific candidate TACs are involved in embryo development, lipid storage and long-chain fatty acid biosynthesis. One root-specific promoter was cloned and characterized. We developed a high-yield screening system in peanut by establishing a simple digital expression profile based on Illumina sequencing. The feasible and rapid method presented by this study can be used for other non-model crops to explore tissue-specific or spatially specific promoters.

28 March 2013 in Plant Cell Reports
Verified
Journal Article
Closed access
PDF file
LGLili Geng
Lili Geng
JCJing Chi
Jing Chi
Changlong ShuChanglong Shu
Changlong Shu
PGPeter Gresshoff
Peter Gresshoff
FSFuping Song
Fuping Song
JZJie Zhang
Jie Zhang

11 January 2024 in Microbiological Research
Verified
Journal Article
Closed access
WXWenyue Xu
Wenyue Xu
XSXiaoxiao Sun
Xiaoxiao Sun
LMLiang Mi
Liang Mi
KWKui Wang
Kui Wang
ZGZiqiong Gu
Ziqiong Gu
LGLili Geng
Lili Geng

28 September 2023 in Toxins
Verified
Journal Article
Open access
PDF file
BXBai Xue
Bai Xue
MWMeiling Wang
Meiling Wang
ZWZeyu Wang
Zeyu Wang
Changlong ShuChanglong Shu
Changlong Shu
LGLili Geng
Lili Geng
JZJie Zhang
Jie Zhang
Bacillus thuringiensis (Bt) is the most widely used biopesticide worldwide and can produce several insecticidal crystal proteins and vegetative insecticidal proteins (Vips) at different growth stages. In our previous study, extracellular polysaccharides (EPSs) of Bt strain HD270 were found to enhance the insecticidal activity of Cry1Ac protoxin against Plutella xylostella (L.) and promote the binding of Cry1Ac to the intestinal brush border membrane vesicles (BBMVs). Whether the synergistic activity of Bt EPSs is common to other Cry1-type or Vip proteins is unclear, as is the potential synergistic mechanism. In this study, crude EPS-HD270 was found to increase the toxicity of Cry1-type toxins and Vip3Aa11 against different lepidopteran pests by approximately 2-fold. The purified EPS-HD270 also possessed synergistic activity against the toxicity of Cry1Ac and Vip3Aa11 against Spodoptera frugiperda (J.E. Smith) and Helicoverpa armigera (Hübner). Furthermore, we found that EPS-HD270 had a strong binding ability with Vip3Aa11 and promoted the binding of Vip3Aa11 to the BBMVs of H. armigera and S. frugiperda. Bt EPS-HD270 also protected Vip3Aa11 from proteolytic processing in larval midgut juice. Bt EPSs had universal synergistic effects on Cry1-type or Vip toxins against S. frugiperda and H. armigera. Bt EPS-HD270 exhibited synergistic activity with Vip3Aa through promotion of binding to BBMVs and protection from digestion by midgut protease. The results indicated that synergistic activity with Bt toxins was an important function of Bt EPSs, which was very different from other Bacillus spp.