Uzbekistan is widely regarded as one of the most diversified sources of the species of Tulipa L. The present study provides the synopsis of the genus Tulipa in this area. According to literature reviews and field surveys, this genus includes 33 species (34 taxa) distributed in Uzbekistan. In this paper, more than 3,500 herbarium specimens deposited in the National Herbarium of Uzbekistan (TASH), Komarov Botanical Institute St. Petersburg, Russia (LE), Moscow State University, Russia (MW), Herbarium of the Institute of Botany and Phytointroduction in Almaty, Kazakhstan (AA) and Herbarium of the Institute of Biology in Bishkek (FRU) were utilized to provide comprehensive genus coverage. The evaluation of their distribution and taxonomic classification were described. The taxonomical analyses, diagnostic keys at sectional and species levels as well as morphologic illustrations of most species distributed in Uzbekistan are provided.

Macro- and micromorphology of seeds are diagnostic characteristics of importance in delimiting taxa in Allium (Amaryllidaceae). However, there is no consensus on the phylogenetic significance of testa cell characteristics and whether they reflect the different evolutionary levels recognized in Allium. Seeds of 95 species (98 samples) representing 14 subgenera and 58 sections of Allium were examined using scanning electron microscopy (SEM) for such traits as periclinal wall surface area of ten testa cells, distance between testa cells (macromorphology), testa cell shapes, and arrangement and structure of anticlinal and periclinal walls (micromorphology). The data matrix was subjected to cladistic analysis. The produced phylogenetic tree was examined against the molecular tree obtained from publically available ITS sequences. The periclinal wall surface area of ten testa cells and the distance between them, examined for the first time, were found useful for delimitation of species in Allium. Based on seed macro- and micromorphology, we present a taxonomic key and a hypothetical reconstruction of the migration routes during the early stages of evolution of Allium. The ancestors of Allium originated in an area bounded by the Caucasus, Central Asia and Iran. The seed testa morphology-based evolutionary state of a species is determined by two parameters: the shape of the periclinal walls and curvature of the anticlinal walls.

Central Asia (CA) is located in the interior of the Eurasian continent and consists of five countries—Kazakhstan, Kyrgyzstan, Tajikistan, Turkmenistan, and Uzbekistan. It contains the largest concentration of temperate deserts and mountains of CA biodiversity hotspots. However, regionwide floristic diversity is sorely lacking, and nationwide floristic diversity is seriously outdated in this region. Using the data collected by the Mapping Asia Plants (MAP) project, we describe and analyze the diverse floristic characteristics of plant diversity in CA at both the regional and national levels, including the dominant families and genera, endemic taxa, and floristic similarity. The results allow the compilation of a new checklist of vascular plants in CA, including 9643 taxa (1198 genera within 139 families) and 3409 endemic taxa (414 genera in 66 families). We confirm that there are 5695, 4036, 4542, 3005, and 4222 species of vascular plants within the CA countries, of which 532, 326, 505, 175, and 301 species are endemic taxa in Kazakhstan, Kyrgyzstan, Tajikistan, Turkmenistan, and Uzbekistan, respectively. The region’s biodiversity is notable for its high degree of endemism—up to 35.35%—which contributes to the floristic uniqueness and the irreplaceability of CA. Tajikistan, encompassing the most dominant area of the CA mountains, has the highest species density (3.19/100 km²) and endemism (11.12%) among the five countries. Neighboring countries such as Tajikistan and Uzbekistan, and Kazakhstan and Kyrgyzstan share more species in common, while Turkmenistan has less species overlap with the other four countries. Trends in endemic and total taxa are consistent. This comprehensive inventory is novel, revealing CA’s plant diversity in two dimensions and providing a solid foundation for subsequent research that will be beneficial to the transboundary conservation and sustainable use of plant resources in CA.

Allium sect. Cepa (Amaryllidaceae) comprises economically important plants, yet resolving the phylogenetic relationships within the section has been difficult as nuclear and chloroplast-based phylogenetic trees have been incongruent. Until now, phylogenetic studies of the section have been based on a few genes. In this study, we sequenced the complete chloroplast genome (plastomes) of four central Asian species of sect. Cepa: Allium oschaninii, A. praemixtum, A. pskemense and A. galanthum. Their chloroplast (cp) genomes included 114 unique genes of which 80 coded proteins. Seven protein-coding genes were highly variable and therefore promising for future phylogenetic and phylogeographic studies. Our plastome-based phylogenetic tree of Allium sect. Cepa revealed two separate clades: one comprising the central Asian species A. oschaninii, A. praemixtum, and A. pskemense, and another comprising A. galanthum, A. altaicum, and two cultivated species, A. cepa and A. fistulosum. These findings contradict previously reported phylogenies that relied on ITS and morphology. Possible explanations for this discrepancy are related to interspecific hybridization of species ancestral to A. galanthum and A. cepa followed by chloroplast capture; however, this is impossible to prove without additional data. Our results suggest that the central Asian Allium species did not play a role in the domestication of the common onion. Among the chloroplast genes, rpoC2 was identified as a gene of choice in further phylogeographical studies of the genus Allium.

Uzbekistan is one of the centers of species diversity of Hedysarum (Fabaceae) in Central Asia, where it occurs mainly in the Tian-Shan and Pamir-Alay Mountains. In this study, we reconstructed the phylogenetic relationships of 26 species occurring in Uzbekistan. The species were classified into three clades in both non-monophyletic ITS and monophyletic plastid trees, corresponding to sections Hedysarum (one species) and Stracheya (two species), and subsection Crinifera (23 species) of section Multicaulia. We further assessed the evolutionary status of 22 morphological characters that are used as diagnostic in the taxonomy of Hedysarum. The results showed that the majority of morphological characteristics in Hedysarum exhibit a high level of homoplasy. Only a few of these characteristics, such as pendent flowers in the raceme (section Hedysarum), division of the pod into joints and joint shape and length of pod bristles, serve as synapomorphies for the monophyletic genus and its sections on the plastid tree. Additionally, we propose evaluating additional characters, such as the presence of 1 or 2 pairs of well-developed leaflets of odd-pinnate leaves, long bracts and bracteoles, as apomorphic conditions in some species of subsection Crinifera. This article also presents descriptions, nomenclatural information, type citations, and country-level distribution maps of the species of Hedysarum in Uzbekistan.