Hamid Reza Ghanavi

Dr. Hamid Reza Ghanavi

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Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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11 March 2022 in Environmental DNA
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FRFabian Roger
Fabian Roger
HGHamid Reza Ghanavi
Hamid Reza Ghanavi
NDNatalie Danielsson
Natalie Danielsson
NWNiklas Wahlberg
Niklas Wahlberg
JLJakob Löndahl
Jakob Löndahl
YCYann Clough
Yann Clough
Biodiversity is in decline due to human‐induced pressures on ecosystems around the world. To be able to counteract this alarming trend, it is paramount to closely monitor biodiversity at global scales. Because this is practically impossible with traditional methods, the last decade has seen a strong push for new solutions. In aquatic ecosystems, the monitoring of species from environmental DNA (eDNA) has emerged as one of the most powerful tools at our disposal, but in terrestrial ecosystems, the power of eDNA for monitoring has so far been hampered by the local scale of the samples. In this study, we report the successful detection of insects from airborne eDNA from samples taken in the field. We compare our results to two traditional insect monitoring methods (1) light traps for moth monitoring and (2) transect walks for the monitoring of butterflies and wild bees. Airborne eDNA metabarcoding revealed DNA from six classes of arthropods, and twelve order of insects—including representatives from the four largest orders: Diptera (flies), Lepidoptera (butterflies and moths), Coleoptera (beetles), and Hymenoptera (bees, wasps, and ants). We did not detect all species observed using traditional methods and suggest further directions for the development of airborne eDNA metabarcoding. We also recovered DNA from nine species of vertebrates, including frogs, birds, and mammals as well as from 12 other phyla. Airborne eDNA has the potential to become a powerful tool for terrestrial biodiversity monitoring, with many impactful applications including the monitoring of pests, invasive, or endangered species and disease vectors.

27 August 2019 in PeerJ
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LMLeidys del Carmen Murillo-Ramos
Leidys del Carmen Murillo-Ramos
GBGunnar Brehm
Gunnar Brehm
PSPasi Sihvonen
Pasi Sihvonen
AHAxel Hausmann
Axel Hausmann
SHSille Holm
Sille Holm
NWNiklas Wahlberg
Niklas Wahlberg
Our study aims to investigate the relationships of the major lineages within the moth family Geometridae, with a focus on the poorly studied Oenochrominae-Desmobathrinae complex, and to translate some of the results into a coherent subfamilial and tribal level classification for the family. We analyzed a molecular dataset of 1,206 Geometroidea terminal taxa from all biogeographical regions comprising up to 11 molecular markers that includes one mitochondrial (COI) and 10 protein-coding nuclear gene regions (wingless, ArgK, MDH, RpS5, GAPDH, IDH, Ca-ATPase, Nex9, EF-1alpha, CAD). The molecular data set was analyzed using maximum likelihood as implemented in IQ-TREE and RAxML. We found high support for the subfamilies Larentiinae, Geometrinae and Ennominae in their traditional scopes. Sterrhinae becomes monophyletic only ifErgaviaWalker,AmetrisHübner andMacrotesWestwood, which are currently placed in Oenochrominae, are formally transferred to Sterrhinae. Desmobathrinae and Oenochrominae are found to be polyphyletic. The concepts of Oenochrominae and Desmobathrinae required major revision and, after appropriate rearrangements, these groups also form monophyletic subfamily-level entities. Oenochrominaes.str. as originally conceived by Guenée is phylogenetically distant fromEpidesmiaand its close relatives. The latter is hereby described as the subfamily Epidesmiinae Murillo-Ramos, Sihvonen & Brehm,subfam. nov.Epidesmiinae are a lineage of “slender-bodied Oenochrominae” that include the generaEcphyasTurner,SystaticaTurner,AdeixisWarren,DichromodesGuenée,PhrixocomesTurner,AbraxaphantesWarren,EpidesmiaDuncan & Westwood andPhratariaWalker. Archiearinae are monophyletic whenDirceandAcalyphesare formally transferred to Ennominae. We also found that many tribes were para- or polyphyletic and therefore propose tens of taxonomic changes at the tribe and subfamily levels. Archaeobalbinistat. rev.Viidalepp (Geometrinae) is raised from synonymy with Pseudoterpnini Warren to tribal rank. Chlorodontoperini Murillo-Ramos, Sihvonen & Brehm,trib. nov.and Drepanogynini Murillo-Ramos, Sihvonen & Brehm,trib. nov.are described as new tribes in Geometrinae and Ennominae, respectively.


20 October 2016 in Ecology and Evolution
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HGHamid Reza Ghanavi
Hamid Reza Ghanavi
EGElena G. Gonzalez
Elena G. Gonzalez
Ignacio DoadrioIgnacio Doadrio
Ignacio Doadrio
The Middle East contains a great diversity of Capoeta species, but their taxonomy remains poorly described. We used mitochondrial history to examine diversity of the algae‐scraping cyprinid Capoeta in Iran, applying the species‐delimiting approaches General Mixed Yule‐Coalescent (GMYC) and Poisson Tree Process (PTP) as well as haplotype network analyses. Using the BEAST program, we also examined temporal divergence patterns of Capoeta. The monophyly of the genus and the existence of three previously described main clades (Mesopotamian, Anatolian‐Iranian, and Aralo‐Caspian) were confirmed. However, the phylogeny proposed novel taxonomic findings within Capoeta. Results of GMYC, bPTP, and phylogenetic analyses were similar and suggested that species diversity in Iran is currently underestimated. At least four candidate species, Capoeta sp4, Capoeta sp5, Capoeta sp6, and Capoeta sp7, are awaiting description. Capoeta capoeta comprises a species complex with distinct genetic lineages. The divergence times of the three main Capoeta clades are estimated to have occurred around 15.6–12.4 Mya, consistent with a Mio‐Pleistocene origin of the diversity of Capoeta in Iran. The changes in Caspian Sea levels associated with climate fluctuations and geomorphological events such as the uplift of the Zagros and Alborz Mountains may account for the complex speciation patterns in Capoeta in Iran.

22 September 2017 in Journal of Heredity
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EGElena G Gonzalez
Elena G Gonzalez
CCCarina Cunha
Carina Cunha
HGHamid Reza Ghanavi
Hamid Reza Ghanavi
FOFrancisco José Oliva-Paterna
Francisco José Oliva-Paterna
MTMar Torralva
Mar Torralva
IDIgnacio Doadrio
Ignacio Doadrio
Secondary freshwater fish species inhabiting fluctuating and extreme environments are susceptible to changes in dispersion, effective population size, and genetic structure. The Iberian toothcarp Aphanius iberus is an endemic cyprinodontid of the Iberian Peninsula restricted to brackish water of salt marshes and coastal lagoons on the eastern Spanish Mediterranean coast. In this study, we analyzed mitochondrial cytochrome b (cyt b) DNA and microsatellite variation to evaluate ways in which the processes of extinction, dispersal, and colonization of A. iberus across its geographic distribution have affected its population genetic structure over time and space. The A. iberus network reconstruction indicated subtle levels of phylogeographic structuring. This, combined with substantial mitochondrial DNA (mtDNA) genetic diversity, suggests that Pleistocene glaciations had a lesser effect on the demographic structure of its populations than was the case for Iberian freshwater species with a similar distribution. Haplotype network, hierarchical analysis of molecular variance, and pairwise ΦST comparisons involving some Levantine samples showed a relatively high degree of mtDNA differentiation, which could be explained by historical isolation of the Villena Lagoon population. Conversely, significant genetic differentiation that follows an isolation-by-distance pattern, and a reduction in Ne though time was detected with microsatellites, suggesting extensive habitat fragmentation on the Mediterranean coast of the Iberian Peninsula over the past hundreds of years. At a smaller geographical scale (Mar Menor Lagoon), habitat fragmentation, probably due to human activity, appears to have resulted in substantially reduced migration and increased genetic drift, as shown by expanded genetic differentiation of populations.

31 December 2024 in Systematic Entomology
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JDJunchen Deng
Junchen Deng
ASAdam Stroiński
Adam Stroiński
JSJacek Szwedo
Jacek Szwedo
HGHamid Reza Ghanavi
Hamid Reza Ghanavi
EYEtka Yapar
Etka Yapar
PŁPiotr Łukasik
Piotr Łukasik
Planthoppers (Hemiptera: Fulgoromorpha) are a species‐rich and globally distributed insect clade with high economic, ecological and evolutionary importance. However, the relationships among planthopper lineages and families remain unclear. Previous efforts based on inconsistent morphological traits, a few genes or limited sampling often resulted in conflicting tree topologies. Here, we used genome‐level data to assemble 1164 nuclear single‐copy genes and 13 mitochondrial protein‐coding genes for 149 planthopper species representing 19 out of 21 extant families. Additional markers were added from published mitogenomes, expanding our sampling to 285 species. These markers were used for maximum likelihood–based tree inference and dating analyses. The newly inferred phylogenies validated well‐accepted relationships and recovered novel placements for several taxa, including the family Achilixiidae and species from the tribe Lyncidini and genus Madagascaritia in Dictyopharidae and Fulgoridae. Based on molecular and morphological evidence, we proposed taxonomic changes including the establishment of a new family Borysthenidae stat. rev. within Delphacoidea and a new superfamily Meenoploidea superfam. nov. with redefined Kinnaridae stat. rev. and Meenoplidae stat. rev. The time analyses based on 57 nuclear markers and 30 fossils dated the origin of extant Fulgoromorpha back to Guadalupian, Permian (~263 Ma), close to the maximum constraint at 267.3 Ma, while applying an older root constraint resulted in an origin in Mississippian, Carboniferous (~332 Ma). While future sampling of unstudied fauna in unexplored regions or habitats may change the topology, the current phylogenomic analysis will serve as a solid foundation for research into planthopper ecology, evolution and significance.