Javier Freire

Dr. Javier Freire

orcid

Research Focus & Metrics

Academic Career Length

4Years (2023-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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8 September 2023 in Biomedicines
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Journal Article
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JFJavier Freire
Javier Freire
PGPilar García-Berbel
Pilar García-Berbel
Belén CarameloBelén Caramelo
Belén Caramelo
LGLucía García-Berbel
Lucía García-Berbel
VOVictor J. Ovejero
Victor J. Ovejero
JGJavier Gómez-Román
Javier Gómez-Román
Background: Determining the infiltration of carcinomas is essential for the proper follow-up and treatment of cancer patients. However, it continues to be a diagnostic challenge for pathologists in multiple types of tumors. In previous studies (carried out in surgical specimens), the protein COL11A1 has been postulated as an infiltration marker mainly expressed in the extracellular matrix (ECM). We hypothesized that a differential expression of COL11A1 may exist in the peritumoral stroma of tumors that have acquired infiltrating properties and that it may be detected in the small biopsies usually available in normal clinical practice. Material and methods: In our study, we performed immunohistochemical staining in more than 350 invasive and noninvasive small samples obtained via core needle biopsy (CNB), colonoscopy, or transurethral resection of bladder tumor (TURBT) of breast, colorectal, bladder, and ovarian cancer. Results: Our results revealed that COL11A1 immunostaining had a sensitivity to classify the samples into infiltrative vs. noninfiltrative tumors of 94% (breast), 97% (colorectal), >90% (bladder), and 74% (ovarian); and a specificity of 97% (breast), 100% (colorectal), and >90% (bladder). In ovarian cancer, the negative predictive value (0.59) did not present improvement over the usual histopathological markers. In all samples tested, the cumulative sensitivity was 86% and the specificity 96% (p < 0.0001). Conclusions: COL11A1-positive immunostaining in small biopsies of breast, colon, bladder and ovarian cancer is an accurate predictive marker of tumor infiltration that can be easily implemented in daily clinical practice.

24 August 2023 in Life
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Journal Article
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MKMaria Kislikova
Maria Kislikova
MLMaria Ana Batlle Lopez
Maria Ana Batlle Lopez
JFJavier Freire
Javier Freire
JPJose Antonio Parra
Jose Antonio Parra
MMMaria Pilar García-Berbel Molina
Maria Pilar García-Berbel Molina
EREMILIO RODRIGO
EMILIO RODRIGO
Clonal hematopoiesis of indeterminate potential (CHIP) is defined by the clonal expansion of hematopoietic stem cells carrying certain genes associated with an increased risk of hematological malignancies. Our study analyzes the influence of CHIP on the risk of heart disease and cardiovascular events in a population with chronic kidney disease (CKD). A total of 128 patients were prospectively followed up for 18 months to detect major cardiovascular events (MACE). To detect the presence of silent heart disease, troponin I, NT-Pro-BNP, and coronary calcification were measured. A massive sequencing was performed to detect CHIP. A total of 24.2% of the patients presented CHIP, including that which was only pathogenic. The most frequently affected gene was TET2 (21.1%). Using multivariate logistic regression analysis, the presence of CHIP was not related to coronary calcification (OR 0.387, 95% CI 0.142–1.058, p = 0.387), nor was it related to troponin I or NT-Pro-BNP. A total of nine patients developed major cardiovascular events. Patients with CHIP did not have a higher risk of major cardiovascular events, although patients with DNMT3A did have a higher risk (HR 6.637, 95% CI 1.443–30.533, p = 0.015), independent of other variables. We did not find that CHIP was associated with a greater risk of silent heart disease or cardiovascular events, although those affected by DNMT3a, analyzed independently, were associated with a greater number of cardiovascular events.

20 October 2023 in Annals of Oncology
Verified
Journal Article
Closed access
JFJavier Freire
Javier Freire
Belén CarameloBelén Caramelo
Belén Caramelo
IMI. Duran Martinez
I. Duran Martinez
SCS. del Carmen
S. del Carmen
AAA. Azueta
A. Azueta
JGJ. Gómez
J. Gómez

16 May 2026 in Cancers
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Journal Article
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Belén CarameloBelén Caramelo
Belén Caramelo
PGPilar García-Berbel
Pilar García-Berbel
SCSofia del Carmen
Sofia del Carmen
ACAdriana Calapaqui
Adriana Calapaqui
LCLuiz Gustavo Guedes Correa
Luiz Gustavo Guedes Correa
JFJavier Freire
Javier Freire
Background/Objectives: Determining homologous recombination repair (HRR) status in metastatic castration-resistant prostate cancer (mCRPC) is essential to ensure access to targeted therapies, particularly PARP inhibitors. Yet, variability in testing access and analysis performance exists. This study evaluated feasibility and outcomes of a centralized HRR testing strategy in Spain for prostate cancer patients. Methods: A total of 1412 formalin-fixed paraffin-embedded (FFPE) tumor samples from mCRPC patients from 89 Spanish institutions within a centralized multicenter molecular testing program were analyzed using a standardized 38-gene-based next-generation sequencing (NGS) assay in a central laboratory (HRR OncoKit, Health in Code, Valencia, Spain), which included five clinically relevant HRR genes: BRCA1, BRCA2, CHEK2, ATM, and CDK12. Results: HRR gene pathogenic or likely pathogenic alterations were identified in 18% (CI 95% = 16–20) of the patients, with BRCA2 being the most frequently altered gene (6%), followed by ATM (5%), CDK12 (4%), BRCA1 (2%), and CHEK2 (1%). Eleven percent had variants of uncertain significance. Only 13% of the samples were rejected due to poor DNA quality, low tumor content or sample age exceeding 5 years, and 2% of the samples analyzed failed since the minimum library technical quality score was not achieved. The average turnaround time for results was 18 ± 3 days. Conclusions: Centralized HRR testing in mCRPC patients in Spain was feasible, efficient and reliable, identifying pathogenic alterations in 18% of the cases, similarly to the prevalence described in the literature. This testing approach facilitates precision medicine by improving the detection of actionable HRR alterations.

29 November 2024 in Qeios Preprints
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Preprint
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JBJonathas Barreto
Jonathas Barreto
AVAna Júlia Vianna
Ana Júlia Vianna
AGAmanda Di Giacomo
Amanda Di Giacomo
CRCamila Ribeiro
Camila Ribeiro
CXCésar Xavier
César Xavier
AMAgnaldo Martins
Agnaldo Martins
The franciscana dolphin (_Pontoporia blainvillei_), a small cetacean native to the Southwestern Atlantic Ocean (SAO), is critically threatened by bycatch in gillnet fisheries and habitat degradation. The Franciscana Management Area (FMA) Ia, located in Espírito Santo, Brazil, harbors the most endangered population of small cetaceans in the SAO. The Doce River region represents a vital habitat for this species, particularly following the 2015 mining waste spill, which further disrupted local ecosystems. Through drone-based monitoring, this study investigates the diving and surface behavior of franciscana dolphins, providing valuable insights for refining population estimates and advancing conservation strategies. The average surface time was 17 seconds (±15s), and the average dive time was 64 seconds (±26s). The diving time was almost four times longer than the surface time. These findings underscore the importance of ongoing monitoring to support effective management of this vulnerable population.