Annette O’Connor

Dr. Annette O’Connor

orcid

Research Focus & Metrics

Academic Career Length

32Years (1995-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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24 March 2024 in Environment International
Verified
Journal Article
Open access
JHJulian P.T. Higgins
Julian P.T. Higgins
RMRebecca L. Morgan
Rebecca L. Morgan
ARAndrew A. Rooney
Andrew A. Rooney
KTKyla W. Taylor
Kyla W. Taylor
KTKristina A. Thayer
Kristina A. Thayer
JSJonathan A.C. Sterne
Jonathan A.C. Sterne
Observational epidemiologic studies provide critical data for the evaluation of the potential effects of environmental, occupational and behavioural exposures on human health. Systematic reviews of these studies play a key role in informing policy and practice. Systematic reviews should incorporate assessments of the risk of bias in results of the included studies. To develop a new tool, Risk Of Bias In Non-randomized Studies - of Exposures (ROBINS-E) to assess risk of bias in estimates from cohort studies of the causal effect of an exposure on an outcome. ROBINS-E was developed by a large group of researchers from diverse research and public health disciplines through a series of working groups, in-person meetings and pilot testing phases. The tool aims to assess the risk of bias in a specific result (exposure effect estimate) from an individual observational study that examines the effect of an exposure on an outcome. A series of preliminary considerations informs the core ROBINS-E assessment, including details of the result being assessed and the causal effect being estimated. The assessment addresses bias within seven domains, through a series of 'signalling questions'. Domain-level judgements about risk of bias are derived from the answers to these questions, then combined to produce an overall risk of bias judgement for the result, together with judgements about the direction of bias. ROBINS-E provides a standardized framework for examining potential biases in results from cohort studies. Future work will produce variants of the tool for other epidemiologic study designs (e.g. case-control studies). We believe that ROBINS-E represents an important development in the integration of exposure assessment, evidence synthesis and causal inference.

18 June 2019 in Systematic Reviews
Verified
Journal Article
Open access
PDF file
AOAnnette O’Connor
Annette O’Connor
GTGuy Tsafnat
Guy Tsafnat
JTJames Thomas
James Thomas
PGPaul Glasziou
Paul Glasziou
SGStephen B. Gilbert
Stephen B. Gilbert
BHBrian Hutton
Brian Hutton
Although many aspects of systematic reviews use computational tools, systematic reviewers have been reluctant to adopt machine learning tools. We discuss that the potential reason for the slow adoption of machine learning tools into systematic reviews is multifactorial. We focus on the current absence of trust in automation and set-up challenges as major barriers to adoption. It is important that reviews produced using automation tools are considered non-inferior or superior to current practice. However, this standard will likely not be sufficient to lead to widespread adoption. As with many technologies, it is important that reviewers see “others” in the review community using automation tools. Adoption will also be slow if the automation tools are not compatible with workflows and tasks currently used to produce reviews. Many automation tools being developed for systematic reviews mimic classification problems. Therefore, the evidence that these automation tools are non-inferior or superior can be presented using methods similar to diagnostic test evaluations, i.e., precision and recall compared to a human reviewer. However, the assessment of automation tools does present unique challenges for investigators and systematic reviewers, including the need to clarify which metrics are of interest to the systematic review community and the unique documentation challenges for reproducible software experiments. We discuss adoption barriers with the goal of providing tool developers with guidance as to how to design and report such evaluations and for end users to assess their validity. Further, we discuss approaches to formatting and announcing publicly available datasets suitable for assessment of automation technologies and tools. Making these resources available will increase trust that tools are non-inferior or superior to current practice. Finally, we identify that, even with evidence that automation tools are non-inferior or superior to current practice, substantial set-up challenges remain for main stream integration of automation into the systematic review process.

1 November 2016 in Preventive Veterinary Medicine
Verified
Journal Article
Open access
JSJan Sargeant
Jan Sargeant
AOAnnette O’Connor
Annette O’Connor
IDI.R. Dohoo
I.R. Dohoo
HEH.N. Erb
H.N. Erb
MCM. Cevallos
M. Cevallos
MWMichael Ward
Michael Ward
The reporting of observational studies in veterinary research presents many challenges that often are not adequately addressed in published reporting guidelines. To develop an extension of the STROBE (Strengthening the Reporting of Observational Studies in Epidemiology) statement that addresses unique reporting requirements for observational studies in veterinary medicine related to health, production, welfare, and food safety. A consensus meeting of experts was organized to develop an extension of the STROBE statement to address observational studies in veterinary medicine with respect to animal health, animal production, animal welfare, and food safety outcomes. Consensus meeting May 11-13, 2014 in Mississauga, Ontario, Canada. Seventeen experts from North America, Europe, and Australia attended the meeting. The experts were epidemiologists and biostatisticians, many of whom hold or have held editorial positions with relevant journals. Prior to the meeting, 19 experts completed a survey about whether they felt any of the 22 items of the STROBE statement should be modified and if items should be added to address unique issues related to observational studies in animal species with health, production, welfare, or food safety outcomes. At the meeting, the participants were provided with the survey responses and relevant literature concerning the reporting of veterinary observational studies. During the meeting, each STROBE item was discussed to determine whether or not re-wording was recommended, and whether additions were warranted. Anonymous voting was used to determine whether there was consensus for each item change or addition. The consensus was that six items needed no modifications or additions. Modifications or additions were made to the STROBE items numbered: 1 (title and abstract), 3 (objectives), 5 (setting), 6 (participants), 7 (variables), 8 (data sources/measurement), 9 (bias), 10 (study size), 12 (statistical methods), 13 (participants), 14 (descriptive data), 15 (outcome data), 16 (main results), 17 (other analyses), 19 (limitations), and 22 (funding). Published literature was not always available to support modification to, or inclusion of, an item. The methods and processes used in the development of this statement were similar to those used for other extensions of the STROBE statement. The use of this extension to the STROBE statement should improve the reporting of observational studies in veterinary research related to animal health, production, welfare, or food safety outcomes by recognizing the unique features of observational studies involving food-producing and companion animals, products of animal origin, aquaculture, and wildlife.

6 June 2014 in Zoonoses and Public Health
Verified
Journal Article
Closed access
PDF file
AOAnnette O’Connor
Annette O’Connor
KAK. M. Anderson
K. M. Anderson
CGC. K. Goodell
C. K. Goodell
JSJ. M. Sargeant
J. M. Sargeant

1 November 2016 in Journal of Veterinary Internal Medicine
Verified
Journal Article
Open access
PDF file
AOAnnette O’Connor
Annette O’Connor
JSJ.M. Sargeant
J.M. Sargeant
IDI.R. Dohoo
I.R. Dohoo
HEH.N. Erb
H.N. Erb
MCM. Cevallos
M. Cevallos
MWMichael Ward
Michael Ward
The STROBE (Strengthening the Reporting of Observational Studies in Epidemiology) statement was first published in 2007 and again in 2014. The purpose of the original STROBE was to provide guidance for authors, reviewers, and editors to improve the comprehensiveness of reporting; however, STROBE has a unique focus on observational studies. Although much of the guidance provided by the original STROBE document is directly applicable, it was deemed useful to map those statements to veterinary concepts, provide veterinary examples, and highlight unique aspects of reporting in veterinary observational studies. Here, we present the examples and explanations for the checklist items included in the STROBE-Vet statement. Thus, this is a companion document to the STROBE-Vet statement methods and process document (JVIM_14575 “Methods and Processes of Developing the Strengthening the Reporting of Observational Studies in Epidemiology—Veterinary (STROBE-Vet) Statement” undergoing proofing), which describes the checklist and how it was developed.

1 March 2010 in Journal of Food Protection
Verified
Journal Article
Closed access
JSJan Sargeant
Jan Sargeant
AOAnnette O’Connor
Annette O’Connor
IGI. A. Gardner
I. A. Gardner
JDJ. S. Dickson
J. S. Dickson
MTM. E. Torrence
M. E. Torrence
KSK. Snedeker
K. Snedeker
Concerns about the completeness and accuracy of reporting of randomized clinical trials (RCTs) and the impact of poor reporting on decision-making have been documented in the medical field over the...