yu song

Mr. yu song


Research Focus & Metrics

Academic Career Length

4Years (2023-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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9 September 2023 in Foods
Verified
Journal Article
Open access
PDF file
YSyu song
yu song
SCSihao Chang
Sihao Chang
JTJing Tian
Jing Tian
WPWeihua Pan
Weihua Pan
LFLu Feng
Lu Feng
Hongchao JiHongchao Ji
Hongchao Ji
Taste determination in small molecules is critical in food chemistry but traditional experimental methods can be time-consuming. Consequently, computational techniques have emerged as valuable tools for this task. In this study, we explore taste prediction using various molecular feature representations and assess the performance of different machine learning algorithms on a dataset comprising 2601 molecules. The results reveal that GNN-based models outperform other approaches in taste prediction. Moreover, consensus models that combine diverse molecular representations demonstrate improved performance. Among these, the molecular fingerprints + GNN consensus model emerges as the top performer, highlighting the complementary strengths of GNNs and molecular fingerprints. These findings have significant implications for food chemistry research and related fields. By leveraging these computational approaches, taste prediction can be expedited, leading to advancements in understanding the relationship between molecular structure and taste perception in various food components and related compounds.

9 April 2025 in Molecules
Verified
Journal Article
Open access
PDF file
YSyu song
yu song
MZMeng Zhang
Meng Zhang
SCSihao Chang
Sihao Chang
GCGanghui Chu
Ganghui Chu
Hongchao JiHongchao Ji
Hongchao Ji
While natural products and derivatives have been crucial in drug discovery, the current databases are limited to known compounds. There is a need for tools that can automatically generate and assess novel derivatives of natural products to enhance early-stage drug discovery. We present DerivaPredict (v1.0), a user-friendly tool that generates novel natural product derivatives through chemical and metabolic transformations. It predicts binding affinities using pretrained deep learning models and assesses drug-likeness via ADMET profiling. DerivaPredict is freely accessible with a source code on GitHub.

29 August 2023 in Preprints.org
Verified
Preprint
Open access
PDF file
YSyu song
yu song
SCSihao Chang
Sihao Chang
JTJing Tian
Jing Tian
WPWeihua Pan
Weihua Pan
LFLu Feng
Lu Feng
Hongchao JiHongchao Ji
Hongchao Ji
Taste determination in small molecules is critical in food chemistry, but traditional experimental methods can be time-consuming. Consequently, computational techniques have emerged as val-uable tools for this task. In this study, we explore taste prediction using various molecular feature representations and assess the performance of different machine learning algorithms on a dataset comprising 2,601 molecules. The results reveal that GNN-based models outperform other ap-proaches in taste prediction. Moreover, consensus models that combine diverse molecular repre-sentations demonstrate improved performance. Among these, molecular fingerprints + GNN con-sensus model emerges as the top performer, highlighting the complementary strengths of GNNs and molecular fingerprints. These findings have significant implications for food chemistry research and related fields. By leveraging these computational approaches, taste prediction can be expedited, leading to advancements in understanding the relationship between molecular structure and taste perception in various food components and related compounds.