John W Tobias

Dr. John W Tobias

Department of Genetics, University of Pennsylvania, Philadelphia, Mississippi, USA
orcid

Research Focus & Metrics

Academic Career Length

18Years (2009-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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16 November 2022 in Nature
Verified
Journal Article
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RKRina Kim
Rina Kim
AHAyumi Hashimoto
Ayumi Hashimoto
NMNune Markosyan
Nune Markosyan
VTVladimir A. Tyurin
Vladimir A. Tyurin
YTYulia Y. Tyurina
Yulia Y. Tyurina
DGDmitry Gabrilovich
Dmitry Gabrilovich

29 July 2019 in Journal of Clinical Investigation
Verified
Journal Article
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NMNune Markosyan
Nune Markosyan
JLJinyang Li
Jinyang Li
YSYu H. Sun
Yu H. Sun
LRLee P. Richman
Lee P. Richman
JLJeffrey H. Lin
Jeffrey H. Lin
RVRobert H. Vonderheide
Robert H. Vonderheide
Resistance to immunotherapy is one of the biggest problems of current oncotherapeutics. While T cell abundance is essential for tumor responsiveness to immunotherapy, factors that define the T cell–inflamed tumor microenvironment are not fully understood. We used an unbiased approach to identify tumor-intrinsic mechanisms shaping the immune tumor microenvironment (TME), focusing on pancreatic adenocarcinoma because it is refractory to immunotherapy and excludes T cells from the TME. From human tumors, we identified ephrin-A receptor 2 (EPHA2) as a candidate tumor-intrinsic driver of immunosuppression. Epha2 deletion reversed T cell exclusion and sensitized tumors to immunotherapy. We found that prostaglandin endoperoxide synthase 2 (PTGS2), the gene encoding cyclooxygenase-2, lies downstream of EPHA2 signaling through TGF-β and is associated with poor patient survival. Ptgs2 deletion reversed T cell exclusion and sensitized tumors to immunotherapy; pharmacological inhibition of PTGS2 was similarly effective. Thus, EPHA2/PTGS2 signaling in tumor cells regulates tumor immune phenotypes; blockade may represent a therapeutic avenue for immunotherapy-refractory cancers. Our findings warrant clinical trials testing the effectiveness of therapies combining EPHA2/TGF-β/PTGS2 pathway inhibitors with antitumor immunotherapy and may change the treatment of notoriously therapy-resistant pancreatic adenocarcinoma.

1 March 2017 in The Journal of Immunology
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Journal Article
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LKLisa M. Russell Knode
Lisa M. Russell Knode
MNMartin S. Naradikian
Martin S. Naradikian
AMArpita Myles
Arpita Myles
JSJean L. Scholz
Jean L. Scholz
YHYi Hao
Yi Hao
PGPatricia J. Gearhart
Patricia J. Gearhart
The origin and nature of age-associated B cells (ABCs) in mice are poorly understood. In this article, we show that their emergence required MHC class II and CD40/CD40L interactions. Young donor B cells were adoptively transferred into congenic recipients and allowed to remain for 1 mo in the absence of external Ag. B cells expressing the T-bet transcription factor, a marker for ABCs, were generated after multiple cell divisions from C57BL/6 donors but not from MHC class II– or CD40-deficient donors. Furthermore, old CD154 (CD40L)-deficient mice did not accrue ABCs, confirming that they arise primarily through T-dependent interactions. To determine what Igs ABCs express, we sequenced VH and Vκ rearranged genes from unimmunized 22-mo-old C57BL/6 mice and showed that they had a heterogeneous repertoire, which was comparable to that seen in old follicular and marginal zone B cell subsets. However, in contrast to the follicular and marginal zone cells, ABCs displayed significant somatic hypermutation. The mutation frequency was lower than found in germinal center cells after deliberate immunization, suggesting that ABCs have undergone mild stimulation from endogenous Ags over time. These observations show that quiescent ABCs are Ag-experienced cells that accumulate during T cell–dependent responses to diverse Ags during the life of an individual.

1 January 2018 in Cellular and Molecular Gastroenterology and Hepatology
Verified
Journal Article
Open access
YKYuta Kasagi
Yuta Kasagi
PCPrasanna M. Chandramouleeswaran
Prasanna M. Chandramouleeswaran
KWKelly A. Whelan
Kelly A. Whelan
KTKoji Tanaka
Koji Tanaka
VGVeronique Giroux
Veronique Giroux
HNHiroshi Nakagawa
Hiroshi Nakagawa
Aberrations in the esophageal proliferation-differentiation gradient are histologic hallmarks in eosinophilic esophagitis (EoE) and gastroesophageal reflux disease. A reliable protocol to grow 3-dimensional (3D) esophageal organoids is needed to study esophageal epithelial homeostasis under physiological and pathologic conditions. We modified keratinocyte-serum free medium to grow 3D organoids from endoscopic esophageal biopsies, immortalized human esophageal epithelial cells, and murine esophagi. Morphologic and functional characterization of 3D organoids was performed following genetic and pharmacologic modifications or exposure to EoE-relevant cytokines. The Notch pathway was evaluated by transfection assays and by gene expression analyses in vitro and in biopsies. Both murine and human esophageal 3D organoids displayed an explicit proliferation-differentiation gradient. Notch inhibition accumulated undifferentiated basal keratinocytes with deregulated squamous cell differentiation in organoids. EoE patient-derived 3D organoids displayed normal epithelial structure ex vivo in the absence of the EoE inflammatory milieu. Stimulation of esophageal 3D organoids with EoE-relevant cytokines resulted in a phenocopy of Notch inhibition in organoid 3D structures with recapitulation of reactive epithelial changes in EoE biopsies, where Notch3 expression was significantly decreased in EoE compared with control subjects. Esophageal 3D organoids serve as a novel platform to investigate regulatory mechanisms in squamous epithelial homeostasis in the context of EoE and other diseases. Notch-mediated squamous cell differentiation is suppressed by cytokines known to be involved in EoE, suggesting that this may contribute to epithelial phenotypes associated with disease. Genetic and pharmacologic manipulations establish proof of concept for the utility of organoids for future studies and personalized medicine in EoE and other esophageal diseases.

1 November 2019 in Molecular Immunology
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Journal Article
Closed access
JGJustin T. Gunesch
Justin T. Gunesch
LALaura S. Angelo
Laura S. Angelo
SMSanjana Mahapatra
Sanjana Mahapatra
RDRaquel P. Deering
Raquel P. Deering
JKJohanna E. Kowalko
Johanna E. Kowalko
EMEmily M. Mace
Emily M. Mace

28 February 2020 in Developmental Biology
Verified
Journal Article
Closed access
MEMelody Esmaeili
Melody Esmaeili
SBShelby A. Blythe
Shelby A. Blythe
JTJohn W Tobias
John W Tobias
KZKai Zhang
Kai Zhang
JYJing Yang
Jing Yang
PKPeter S. Klein
Peter S. Klein