Naoya Shibayama

Prof. Naoya Shibayama


Research Focus & Metrics

Academic Career Length

41Years (1986-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 July 2006 in Journal of Molecular Biology
Verified
Journal Article
Closed access
SPSam-Yong Park
Sam-Yong Park
TYTakeshi Yokoyama
Takeshi Yokoyama
NSNaoya Shibayama
Naoya Shibayama
YSYoshitsugu Shiro
Yoshitsugu Shiro
JTJeremy R.H. Tame
Jeremy R.H. Tame

27 July 2008 in Nature
Verified
Journal Article
Closed access
PDF file
EOEiji Obayashi
Eiji Obayashi
HYHisashi Yoshida
Hisashi Yoshida
FKFumihiro Kawai
Fumihiro Kawai
NSNaoya Shibayama
Naoya Shibayama
AKAtsushi Kawaguchi
Atsushi Kawaguchi
SPSam-Yong Park
Sam-Yong Park

1 April 2018 in Arteriosclerosis, Thrombosis, and Vascular Biology
Verified
Journal Article
Closed access
PDF file
TKTadayoshi Karasawa
Tadayoshi Karasawa
AKAkira Kawashima
Akira Kawashima
FUFumitake Usui-Kawanishi
Fumitake Usui-Kawanishi
SWSachiko Watanabe
Sachiko Watanabe
HKHiroaki Kimura
Hiroaki Kimura
MTMasafumi Takahashi
Masafumi Takahashi
Objective—: Inflammation provoked by the imbalance of fatty acid composition, such as excess saturated fatty acids (SFAs), is implicated in the development of metabolic diseases. Recent investigations suggest the possible role of the NLRP3 (nucleotide-binding oligomerization domain, leucine-rich repeat and pyrin domain containing 3) inflammasome, which regulates IL-1β (interleukin 1β) release and leads to inflammation, in this process. Therefore, we investigated the underlying mechanism by which SFAs trigger NLRP3 inflammasome activation. Approach and Results—: The treatment with SFAs, such as palmitic acid and stearic acid, promoted IL-1β release in murine primary macrophages while treatment with oleic acid inhibited SFA-induced IL-1β release in a dose-dependent manner. Analyses using polarized light microscopy revealed that intracellular crystallization was provoked in SFA-treated macrophages. As well as IL-1β release, the intracellular crystallization and lysosomal dysfunction were inhibited in the presence of oleic acid. These results suggest that SFAs activate NLRP3 inflammasome through intracellular crystallization. Indeed, SFA-derived crystals activated NLRP3 inflammasome and subsequent IL-1β release via lysosomal dysfunction. Excess SFAs also induced crystallization and IL-1β release in vivo. Furthermore, SFA-derived crystals provoked acute inflammation, which was impaired in IL-1β–deficient mice. Conclusions—: These findings demonstrate that excess SFAs cause intracellular crystallization and subsequent lysosomal dysfunction, leading to the activation of the NLRP3 inflammasome, and provide novel insights into the pathogenesis of metabolic diseases.

1 August 1995 in Journal of Molecular Biology
Verified
Journal Article
Closed access
NSNaoya Shibayama
Naoya Shibayama
SSSatoshi Saigo
Satoshi Saigo

31 May 2016 in Proceedings of the National Academy of Sciences
Verified
Journal Article
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MOMio Ohki
Mio Ohki
KSKanako Sugiyama
Kanako Sugiyama
FKFumihiro Kawai
Fumihiro Kawai
HTHitomi Tanaka
Hitomi Tanaka
YNYuuki Nihei
Yuuki Nihei
SPSam-Yong Park
Sam-Yong Park
Significance: Optogenetics is a rapidly growing field in which light is used to control biological systems. We show that Oscillatoria acuminata photoactivated adenylate cyclase (OaPAC) protein produces the fundamental second messenger cyclic-AMP (cAMP) in response to blue light, is stable and functional in different mammalian cell types, and can be used to trigger events by raising cAMP level. OaPAC consists of a catalytic domain controlled by a photosensitive blue light using flavin (BLUF) domain. We have solved the crystal structure to show how activity is triggered by light, and guide mutagenesis experiments. Although the catalytic domain resembles known cyclases, the BLUF domains form an unusual intertwined structure. The protein activity is the same in solution as in the crystal, showing that the activation mechanism involves only small molecular movements.

1 September 1998 in Journal of Biological Chemistry
Verified
Journal Article
Open access
PDF file
SUSatoru Unzai
Satoru Unzai
RERaymund Eich
Raymund Eich
NSNaoya Shibayama
Naoya Shibayama
JOJohn S. Olson
John S. Olson
HMHideki Morimoto
Hideki Morimoto
Despite a large amount of work over the past 30 years, there is still no universal agreement on the differential reactivities of the individual α and β subunits in human hemoglobin. To address this question systematically, we prepared a series of hybrid hemoglobins in which heme was replaced by chromium(III), manganese(III), nickel(II), and magnesium(II) protoporphyrin IXs in either the α or β subunits to produce α2(M)β2(Fe)1and α2(Fe)β2(M) tetramers. None of the abnormal metal complexes react with dioxygen or carbon monoxide. The O2 affinities of the resultant hemoglobins vary from 3 μm −1 (Cr(III)/Fe(II) hybrids) to 0.003 μm −1 (Mg(II)/Fe(II) hybrids), covering the full range expected for the various high (R) and low (T) affinity quaternary conformations, respectively, of human hemoglobin A0. The α and β subunits in hemoglobin have similar O2 affinities in both quaternary states, despite the fact that the R to T transition causes significantly different structural changes in the α and β heme pockets. This functional equivalence almost certainly evolved to maintain high n values for efficient O2 transport.