The spatial distribution of biodiversity and related processes is the core of Biogeography. Amazonia is the world's most diverse rainforest and the primary source of diversity to several Neotropical regions. The origins of such diversity continue to be an unresolved question in evolutionary biology. Among many competing hypotheses to explain the evolution of the Amazonian biodiversity, one stands out as the most influential: the refugia hypothesis by Jürgen Haffer. Here, we provide a chronological overview on how the refugia hypothesis evolved over the decades and how the criticism from different fields affected its acceptance. We conclude that the refugia hypothesis alone cannot explain the diversification of the complex Amazonian diversity, and perhaps it was not the most important diversification mechanism. However, the debate provoked by refugia has produced a great amount of knowledge on Amazonian climatic, geological, and evolutionary processes, as well as on species distributions, movements, and history.

Bothrops atrox snakes are mostly endemic of the Amazon rainforest and is certainly the South American pit viper responsible for most of the snakebites in the region. The composition of B. atrox venom is significantly known and has been used to trace the relevance of the venom phenotype for snake biology and for the impacts in the clinics of human patients involved in accidents by B. atrox. However, in spite of the wide distribution and the great medical relevance of B. atrox snakes, B. atrox taxonomy is not fully resolved and the impacts of the lack of taxonomic resolution on the studies focused on venom or envenoming are currently unknown. B. atrox venom presents different degrees of compositional variability and is generally coagulotoxic, inducing systemic hematological disturbances and local tissue damage in snakebite patients. Antivenoms are the effective therapy for attenuating the clinical signs. This review brings a comprehensive discussion of the literature concerning B. atrox snakes encompassing from snake taxonomy, diet and venom composition, towards clinical aspects of snakebite patients and efficacy of the antivenoms. This discussion is highly supported by the contributions that venomics and antivenomics added for the advancement of knowledge of B. atrox snakes, their venoms and the treatment of accidents they evoke.

The study describes habitat use and temporal occurrence of calling males for an austral anuran assemblage in the Neotropics, southern Brazil. Three study sites (S1 – a permanent river and a stream, S2 – a dam and backwater, S3 – two permanent ponds periodically connected) were sampled between August 2005 and July 2006. The site S3 presented the richest and most diverse assemblage and habitat use within studied sites, and was partitioned by species groups. Richness and abundance of calling males for overall assemblage were seasonal, concentrated in spring and summer and correlated with photoperiod. Temperature, rainfall and air humidity were not correlated with the richness and abundance of calling males. Photoperiod also explained the calling seasons when species were analyzed individually. Habitat use and temporal occurrence were complementary in the partitioning of breeding resources, explaining species coexistence.

The identification of divergence in reproductive traits may substantially improve integrative approaches to understand species limits within clades that are suspected to contain cryptic diversity. The frog Allobates femoralis has been regarded as a pan-Amazonian species, and widely used as a model for addressing evolutionary issues regarding patterns of intraspecific diversification, social organisation, and animal communication. Recent accumulation of genetic, morphological, and bioacoustic data gathered from different localities strongly supports the idea that it represents a species complex, but field behavioural observations related to courtship and mating are surprisingly scarce. Here, we provide a description of several aspects of the reproductive biology of A. femoralis from a Central Amazon site, and compare our results with the few published reports for the species. This study demonstrated that, besides the known divergence in the number of notes of the A. femoralis call, there are both quantitative and qualitative differences regarding reproductive traits between two populations of this taxon. The most striking difference was the observation of cephalic amplexus in the population from the Reserva Ducke, Brazil, which contrasts with the absence of any kind of body contact between A. femoralis pairs during mating interactions at the Panguana Biological Station, Peru. In addition, we report for the first time a set of visual components of the courtship behaviour, such as throat display, limb lifting, circling, and leg stretching. Behavioural differences can lead to a pre-zygotic isolation, thus representing a first step in the speciation process through differential sexual preferences. Hence, our finding of divergence in a set of traits probably related to mate recognition and choice is surprising within populations assigned to a single clade, and highlights the importance of considering behavioural traits in order to disentangle the evolutionary forces driving the diversification of A. femoralis.