Physalis philadelphica, a member of the Solanaceae family, commonly known as Physalis, is a one-year-old herbaceous plant with both medicinal and edible properties, as well as ornamental value. At present, only limited research is available on the flower color of P. philadelphica. This study aimed to elucidate the metabolic characteristics underlying the flower color of P. philadelphica and to identify key genes associated with flower color metabolism. We selected two representative varieties of P. philadelphica with significant differences in flower color, namely, “Tieba” (yellow flower) and “Qingjin” (yellow-purple flower), as the experimental materials. The analysis of related pigment components and the determination of relative content by high-performance liquid chromatography were conducted to investigate the flower color-related metabolic pathways of P. philadelphica. Through next-generation sequencing, these pathways were further investigated for the characteristics and differentially expressed genes (DEGs) associated with flower color formation. The results of the research show that: Anthocyanin is the main component of petal coloring of P. philadelphica var. Qingjin, while malvidin pigment, pelargonidin, delphinidin, and cyanidin are the main components of flower color intensity. Carotenoids are the main components of the petal coloring of P. philadelphica var. Tieba and β-carotene is the main component of flower color intensity. Comparing different developmental stages of these two kinds of Physalis pubescens, we identified two key transcription factors (TFs) (eBP and STAT) that were involved in the inhibition of anthocyanin synthesis and regulate the inhibition of pf05G124640 (dihydroflavonol 4-reductase) and pf09G224140 (anthocyanin synthase) in anthocyanin synthesis. One heat shock transcription factor was found to regulate the flavonoid and flavonol synthesis pathway of pf01G020090 (anthocyanin 3-O-glucosyltransferase); two key TFs (NAC and G2-Like), pf10G255070 (isoricin dehydrogenase) and pf09G237080 (abscisic acid 8′-hydroxylase), played important roles in carotene biosynthesis. This study provides new insights for further exploration of the genetic diversity of petal coloring in P. philadelphica and establishes a foundation for subsequent molecular breeding efforts.

The potato is a pivotal food crop on a global scale. Nitrate reductase (NR) and nitrite reductase (NiR) are the key enzymes in nitrogen assimilation. In previous research, we found that the nitrogen assimilation process was effectively regulat...

Physalis pubescens and Physalis alkekengi, members of the Physalis genus, are valued for their delicious and medicinal fruits as well as their different ripened fruit colors—golden for P. pubescens and scarlet for P. alkekengi. This study aimed to elucidate the pigment composition and genetic mechanisms during fruit maturation in these species. Fruit samples were collected at four development stages, analyzed using spectrophotometry and high-performance liquid chromatography (HPLC), and complemented with transcriptome sequencing to assess gene expression related to pigment biosynthesis. β-carotene was identified as the dominant pigment in P. pubescens, contrasting with P. alkekengi, which contained both lycopene and β-carotene. The carotenoid biosynthesis pathway was central to fruit pigmentation in both species. Key genes pf02G043370 and pf06G178980 in P. pubescens, and TRINITY_DN20150_c1_g3, TRINITY_DN10183_c0_g1, and TRINITY_DN23805_c0_g3 in P. alkekengi were associated with carotenoid production. Notably, the MYB-related and bHLH transcription factors (TFs) regulated zeta-carotene isomerase and β-hydroxylase activities in P. pubescens with the MYB-related TF showing dual regulatory roles. In P. alkekengi, six TF families—bHLH, HSF, WRKY, M-type MADS, AP2, and NAC—were implicated in controlling carotenoid synthesis enzymes. Our findings highlight the intricate regulatory network governing pigmentation and provide insights into Physalis germplasm’s genetic improvement and conservation.

The growth and development of Cypripedium macranthos Sw. are affected by environmental factors, such as temperature, humidity, soil type, and its crown density. In this study, its morphological attributes, physiological traits, and interactions with environmental factors were analysed. The results indicate that the growth of C. macranthos was limited by elevated crown density, soil alkaline-hydrolysed nitrogen, and available soil potassium concentration. Moreover, the physiological attributes of C. macranthos were variably suppressed by high crown density and elevated soil alkaline-hydrolysed nitrogen concentration, whereas enhanced available soil potassium concentration promoted these physiological characteristics. At lower crown density, C. macranthos had greater photosynthetic capacity and higher δ¹³C, C, and N, which were more favourable for organic matter accumulation and plant growth and development. Conversely, at higher crown densities, plants relied more heavily on mycorrhizal fungi for nutrient acquisition. In conclusion, crown density, soil alkali-hydrolysed nitrogen, and available soil potassium concentration were the main environmental factors influencing the morphological and functional form of C. macranthos. Optimal growth conditions were identified at a crown density of 0.5–0.7, soil alkali-hydrolysed nitrogen concentration of 155.06–246.98 mg/kg, and available potassium concentration of 432.53–502.87 mg/kg. The results of this study provide a theoretical understanding for developing conservation strategies for C. macranthos to ensure the stability of the wild population and the health of its habitats.

The oil bean is a high-quality, economically valuable variety of kidney bean (Phaseolus vulgaris L.) that is widely cultivated in Northeast China. However, the prevalence of anthracnose, caused by a combination of factors, including continuous cropping over many years, has led to significant declines in both yield and quality. The mitogen-activated protein kinase (MAPK) cascade is a highly conserved plant cell signaling pathway that plays a pivotal role in plant growth and development, as well as responses to biotic stress. However, its role in the response of P. vulgaris to anthracnose infection has not previously been reported. We identified and characterized thirteen MAPK genes (PvMAPK01–PvMAPK13) in the P. vulgaris genome. These genes were found on eight of the eleven chromosomes of P. vulgaris, and phylogenetic analyses classified them into four previously established subgroups (A–D). Analysis of the cis-acting elements in their promoter regions revealed the presence of multiple elements associated with light, hormone regulation, stress responses, and growth and development. An analysis of intraspecific collinearity revealed that whole-genome and/or segmental duplication, rather than tandem duplication, has been the primary driver of PvMAPK family expansion in P. vulgaris. Transcriptome data revealed that the PvMAPKs differed in their tissue-specific expression patterns, with PvMAPK05 showing particularly high expression in stems and stem tips and PvMAPK07 and PvMAPK11 showing relatively low expression across all tissues. In general, expression of the PvMAPKs was higher in stems, stem tips, and pods than in other tissues and organs, suggesting that they may be particularly important for regulating stem and pod development. Analysis of the expression of PvMAPKs in field-grown plants infected or uninfected with anthracnose revealed that the relative expression levels of PvMAPK05, PvMAPK07, PvMAPK09, and PvMAPK11 exhibited particularly significant changes in response to anthracnose infection across different varieties, suggesting their potential involvement in the anthracnose response of Phaseolus vulgaris. This study reports the fundamental characteristics of the thirteen MAPK genes in P. vulgaris, documents their expression patterns in diverse tissues, and offers preliminary insights into their responses to anthracnose infection, establishing a foundation for subsequent functional validation.

Anthracnose has become one of the major diseases limiting common bean production, severely affecting its yield and commercial quality. Screening for resistant varieties, exploring their resistance mechanisms, and breeding new resistant cultivars have emerged as urgent issues to address. Therefore, this experiment utilized common bean germplasm resources with varying resistance levels to anthracnose as materials. By inoculating with Colletotrichum lindemuthianum, the activities of key en-zymes—including superoxide dismutase (SOD), peroxidase (POD), polyphenol oxidase (PPO), phenylalanine ammonia lyase (PAL), glutathione S-transferase (GST), and chi-tinase (CHI)—as well as malondialdehyde (MDA) content were measured. Transcrip-tional regulation was analyzed to investigate the physiological and biochemical re-sistance mechanisms among different resistant germplasms. Additionally, differen-tially expressed genes (DEGs) and pathways associated with anthracnose resistance were screened. The results showed that, based on the analysis of physiological and biochemical changes in common bean leaves post-inoculation, the MDA content decreased in all varieties except Wuchang Dayoudou. Regarding antioxidant enzyme activities, the SOD, POD, and PPO activities in the leaves of different common bean varieties in-creased, indicating that pathogen infection could induce the upregulation of antioxi-dant enzyme activities. In contrast, GST activity decreased under pathogen stress. CHI activity increased after pathogen infection. Following pathogen challenge, PAL activi-ty increased in resistant varieties but decreased in susceptible ones. Transcriptome analysis of common bean leaves and pods revealed that the primary metabolic pathways associated with resistance were significantly enriched in phe-nylpropanoid biosynthesis, MAPK signaling pathway, and plant hormone signal transduction. Among these pathways, 13 genes were screened in phenylpropanoid bi-osynthesis, 6 genes in the MAPK signaling pathway, and 3 genes in plant hormone signal transduction. Additionally, other resistance-related pathways and transcription factors were analyzed, identifying 2 genes in the peroxisome pathway, 2 genes in the plant-pathogen interaction pathway, and 12 transcription factors (including AP2, WRKY, and ERF families). These differentially expressed genes are hypothesized to re-spond to Colletotrichum lindemuthianum stress.