Dan Zhang

Dr. Dan Zhang

orcid

Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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29 January 2024 in PeerJ
Verified
Journal Article
Open access
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HTHuijuan Tian
Huijuan Tian
HLHong Liu
Hong Liu
DZDan Zhang
Dan Zhang
MHMengting Hu
Mengting Hu
FZFulai Zhang
Fulai Zhang
KYKaizhi Yang
Kaizhi Yang
Soil salinization is a widely recognized global environmental concern that has a significant impact on the sustainable development of agriculture at a global scale. Maize, a major crop that contributes to the global agricultural economy, is particularly vulnerable to the adverse effects of salt stress, which can hinder its growth and development from germination to the seedling stage. This study aimed to screen highly salt-tolerant maize varieties by using four NaCl concentrations of 0, 60, 120, and 180 mMol/L. Various agronomic traits and physiological and biochemical indices associated with salt tolerance were measured, and salt tolerance was evaluated using principal component analysis, membership function method, and GGE biplot analysis. A total of 41 local maize varieties were assessed based on their D values. The results show that stem thickness, germ length, radicle length, leaf area, germination rate, germination index, salt tolerance index, and seed vigor all decreased as salt concentration increased, while electrical conductivity and salt injury index increased with the concentration of saline solution. Under the stress of 120 mMol/L and 180 mMol/L NaCl, changes in antioxidant enzymes occurred, reflecting the physiological response mechanisms of maize under salt stress. Principal component analysis identified six major components including germination vigor, peroxidase (POD), plant height, embryo length, SPAD chlorophyll and proline (PRO) factors. After calculating the comprehensive index (D value) of each variety’s performance in different environments using principal component analysis and the membership function method, a GGE biplot analysis was conducted to identify maize varieties with good salt tolerance stability: Qun Ce 888, You Qi 909, Ping An 1523, Xin Nong 008, Xinyu 66, and Hong Xin 990, as well as varieties with poor salt tolerance: Feng Tian 14, Xi Meng 668, Ji Xing 218, Gan Xin 2818, Hu Xin 712, and Heng Yu 369. Furthermore, it was determined that a 120 mMol/L NaCl concentration was suitable for screening maize varieties during germination and seedling stages. This study further confirmed the reliability of GGE biplot analysis in germplasm selection, expanded the genetic resources of salt-tolerant maize, and provided theoretical references and germplasm utilization for the introduction of maize in saline-alkali areas. These research findings contribute to a better understanding of maize salt tolerance and promote its cultivation in challenging environments.

8 May 2015 in BMC Genomics
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JHJun Huang
Jun Huang
YGYoujun Gao
Youjun Gao
HJHaitao Jia
Haitao Jia
LLLei Liu
Lei Liu
DZDan Zhang
Dan Zhang
ZZzuxin Zhang
zuxin Zhang
Alternative splicing (AS) is an important regulatory mechanism that greatly contributes to eukaryotic transcriptome diversity. A substantial amount of evidence has demonstrated that AS complexity is relevant to eukaryotic evolution, development, adaptation, and complexity. In this study, six teosinte and ten maize transcriptomes were sequenced to analyze AS changes and signatures of selection in maize domestication and improvement. In maize and teosinte, 13,593 highly conserved genes, including 12,030 multiexonic genes, were detected. By identifying AS isoforms from mutliexonic genes, we found that AS types were not significantly different between maize and teosinte. In addition, the two main AS types (intron retention and alternative acceptor) contributed to more than 60% of the AS events in the two species, but the average unique AS events per each alternatively spliced gene in maize (4.12) was higher than that in teosinte (2.26). Moreover, 94 genes generating 98 retained introns with transposable element (TE) sequences were detected in maize, which is far more than 9 retained introns with TEs detected in teosinte. This indicates that TE insertion might be an important mechanism for intron retention in maize. Additionally, the AS levels of 3864 genes were significantly different between maize and teosinte. Of these, 151 AS level-altered genes that are involved in transcriptional regulation and in stress responses are located in regions that have been targets of selection during maize improvement. These genes were inferred to be putatively improved genes. We suggest that both maize and teosinte share similar AS mechanisms, but more genes have increased AS complexity during domestication from teosinte to maize. Importantly, a subset of AS level-increased genes that encode transcription factors and stress-responsive proteins may have been selected during maize improvement.

16 August 2019 in BMC Genomics
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Journal Article
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WSWei Sun
Wei Sun
DCDong Chen
Dong Chen
YXYaqiang Xue
Yaqiang Xue
LZLihong Zhai
Lihong Zhai
DZDan Zhang
Dan Zhang
ZZzuxin Zhang
zuxin Zhang
Argonaute proteins (AGOs) are important players in the regulation of plant development by directing sRNAs to target mRNAs. In maize (Zea mays), AGO18b is a tassel-enriched and grass-specific AGO. Previous studies have shown that AGO18b is highly expressed in tassels during meiosis and negatively regulates determinacy of spikelet meristems. However, binding profile on RNAs and acting mechanisms of AGO18b remain unknown. In this study, we explored the binding profile of AGO18b in maize tassel by UV cross-linking RNA immunoprecipitation, followed by deep sequencing of these cDNA libraries (cRIP-seq), and systematically studied AGO18b-associated small RNAs and mRNAs by bioinformatics analysis. By globally analyzing the phased small-interfering RNA (phasiRNA) and miRNA abundance bound by AGO18b, we found AGO18b primarily binds to 21-nt phasiRNAs/miRNAs with a 5′-uridine and binds less strongly to 24-nt phasiRNAs with a 5′-adenosine in the premeiotic tassels. The abundance profile of AGO18b-associated miRNAs was different from their expression profile. Moreover, AGO18b strongly binds to miR166a-3p. We then obtained the AGO18b-bound mRNA targets of miR166a-3p by cRIP-seq, and confirmed the molecular function of AGO18b in regulating spikelet meristems. Our results indicated that AGO18b binds to phasiRNAs with obvious 5 prime end bias under different sRNA length. MiRNAs and their target mRNAs associated with AGO18b indicated the molecular mechanisms of AGO18b as a negative regulator of inflorescence meristem and tassel development through integrating both phasiRNAs and miRNA pathways, which extended our view of sRNA regulation in flower development and provided potential methods to control pollination in the future.

8 September 2025 in Frontiers in Plant Science
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Journal Article
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WDWentao Du
Wentao Du
FZFuLai Zhang
FuLai Zhang
LZLei Zhang
Lei Zhang
MHMengting Hu
Mengting Hu
HTHuijuan Tian
Huijuan Tian
DZDan Zhang
Dan Zhang
Introduction: Maize is one of the most important staple crops globally, but drought stress has emerged as a major abiotic factor limiting its productivity.Methods: This study, conducted in 2023 at the Key Laboratory of Genetic Improvement and Efficient Production of Specialty Crops in Southern Xinjiang Arid Regions, College of Agriculture, Tarim University, aimed to identify key drought-tolerant traits and maize varieties. Drought stress was applied during the germination and seedling stages, and 15 drought resistance indices, including germination rate (GR), germination energy (GE), plumule length, plant height (PH), and chlorophyll content (ChL), were comprehensively evaluated.Results: Drought stress significantly reduced GR, GE, and the germination index, while also inhibiting coleoptile and radicle growth. It further impeded seedling development, as evidenced by decreased PH, reduced ChL content, and lower biomass accumulation. Correlation analysis showed varying degrees of association among the 15 drought resistance indices. Principal component analysis grouped these indices into five composite components, accounting for 75.22% of the total cumulative variance. Stepwise regression analysis produced the following equation: D = -0.002 + 0.13×GEI + 0.938×RFWI + 0.115×RLI + 0.112×DWPI + 0.097×ChlI. Based on the D values, cluster analysis classified 41 maize germplasm resources into five categories: extremely drought-tolerant, strongly drought-tolerant, moderately drought-tolerant, drought-sensitive, and highly drought-sensitive. The extremely drought-tolerant varieties included Yuanyuan 1, Ximon 6, Jinongyu 309, Nongkeyu 368, Xuanhe 8, Hengyu 369, and Nongfu 99.Discussion: These findings provide a theoretical foundation for breeding drought-resistant maize and identifying drought-tolerant genotypes.

5 September 2024 in Environmental Science: Nano
Verified
Journal Article
Closed access
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JLJiahao Liu
Jiahao Liu
DZDan Zhang
Dan Zhang
LBLinfeng Bao
Linfeng Bao
MYMao ting Yong
Mao ting Yong
LZLinbo Zhao
Linbo Zhao
YZYunlong Zhai
Yunlong Zhai
Primary mechanism through which nanomaterials enhance plant photosynthesis.

17 May 2024 in Plants
Verified
Journal Article
Open access
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MHMengting Hu
Mengting Hu
HTHuijuan Tian
Huijuan Tian
KYKaizhi Yang
Kaizhi Yang
SDShuqi Ding
Shuqi Ding
YHYing Hao
Ying Hao
DZDan Zhang
Dan Zhang
In the period 2022–2023, an analysis of fourteen phenotypic traits was conducted across 192 maize accessions in the Aral region of Xinjiang. The Shannon–Wiener diversity index was employed to quantify the phenotypic diversity among the accessions. Subsequently, a comprehensive evaluation of the index was performed utilizing correlation analysis, principal component analysis (PCA) and cluster analysis. The results highlighted significant findings: (1) A pronounced diversity was evident across the 192 maize accessions, accompanied by complex interrelationships among the traits. (2) The 14 phenotypic traits were transformed into 3 independent indicators through principal component analysis: spike factor, leaf width factor, and number of spikes per plant. (3) The 192 materials were divided into three groups using cluster analysis. The phenotypes in Group III exhibited the best performance, followed by those in Group I, and finally Group II. The selection of the three groups can vary depending on the breeding objectives. This study analysed the diversity of phenotypic traits in maize germplasm resources. Maize germplasm was categorised based on similar phenotypes. These findings provide theoretical insights for the study of maize accessions under analogous climatic conditions in Alar City, which lay the groundwork for the efficient utilization of existing germplasm as well as the development and selection of new varieties.