Sidharth Chopra

Dr. Sidharth Chopra

orcid

Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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5 April 2013 in PLOS ONE
Verified
Journal Article
Open access
PDF file
PMPeter B. Madrid
Peter B. Madrid
SCSidharth Chopra
Sidharth Chopra
IMIan D. Manger
Ian D. Manger
LGLynne Gilfillan
Lynne Gilfillan
TKTiffany R. Keepers
Tiffany R. Keepers
MTMary J. Tanga
Mary J. Tanga
The rapid development of effective medical countermeasures against potential biological threat agents is vital. Repurposing existing drugs that may have unanticipated activities as potential countermeasures is one way to meet this important goal, since currently approved drugs already have well-established safety and pharmacokinetic profiles in patients, as well as manufacturing and distribution networks. Therefore, approved drugs could rapidly be made available for a new indication in an emergency. A large systematic effort to determine whether existing drugs can be used against high containment bacterial and viral pathogens is described. We assembled and screened 1012 FDA-approved drugs for off-label broad-spectrum efficacy against Bacillus anthracis; Francisella tularensis; Coxiella burnetii; and Ebola, Marburg, and Lassa fever viruses using in vitro cell culture assays. We found a variety of hits against two or more of these biological threat pathogens, which were validated in secondary assays. As expected, antibiotic compounds were highly active against bacterial agents, but we did not identify any non-antibiotic compounds with broad-spectrum antibacterial activity. Lomefloxacin and erythromycin were found to be the most potent compounds in vivo protecting mice against Bacillus anthracis challenge. While multiple virus-specific inhibitors were identified, the most noteworthy antiviral compound identified was chloroquine, which disrupted entry and replication of two or more viruses in vitro and protected mice against Ebola virus challenge in vivo. The feasibility of repurposing existing drugs to face novel threats is demonstrated and this represents the first effort to apply this approach to high containment bacteria and viruses.

20 December 2023 in npj Antimicrobials and Resistance
Verified
Journal Article
Open access
PDF file
DSDeepanshi Saxena
Deepanshi Saxena
RMRahul Maitra
Rahul Maitra
RBRakhi Bormon
Rakhi Bormon
MCMarta Czekanska
Marta Czekanska
JMJoscha Meiers
Joscha Meiers
SCSidharth Chopra
Sidharth Chopra
Emerging resistance to all available antibiotics highlights the need to develop new antibiotics with novel mechanisms of action. Most of the currently used antibiotics target Gram-positive bacteria while Gram-negative bacteria easily bypass the action of most drug molecules because of their unique outer membrane. This additional layer acts as a potent barrier restricting the entry of compounds into the cell. In this scenario, several approaches have been elucidated to increase the accumulation of compounds into Gram-negative bacteria. This review includes a brief description of the physicochemical properties that can aid compounds to enter and accumulate in Gram-negative bacteria and covers different strategies to target or bypass the outer membrane-mediated barrier in Gram-negative bacterial pathogens.

2 November 2011 in Journal of Antimicrobial Chemotherapy
Verified
Journal Article
Open access
PDF file
SCSidharth Chopra
Sidharth Chopra
KMKaren Matsuyama
Karen Matsuyama
TTTran Tran
Tran Tran
JMJeremiah P. Malerich
Jeremiah P. Malerich
BWBaojie Wan
Baojie Wan
PMPeter B. Madrid
Peter B. Madrid
New classes of drugs are needed to treat tuberculosis (TB) in order to combat the emergence of resistance to existing agents and shorten the duration of therapy. Targeting DNA gyrase is a clinically validated therapeutic approach using fluoroquinolone antibiotics to target the gyrase subunit A (GyrA) of the heterotetramer. Increasing resistance to fluoroquinolones has driven interest in targeting the gyrase subunit B (GyrB), which has not been targeted for TB. The biological activities of two potent small-molecule inhibitors of GyrB have been characterized to validate its targeting as a therapeutic strategy for treating TB. Novobiocin and aminobenzimidazole 1 (AB-1) were tested for their activity against Mycobacterium tuberculosis (Mtb) H37Rv and other mycobacteria. AB-1 and novobiocin were also evaluated for their interaction with rifampicin and isoniazid as well as their potential for cytotoxicity. Finally, AB-1 was tested for in vivo efficacy in a murine model of TB. Novobiocin and AB-1 have both been shown to be active against Mtb with MIC values of 4 and 1 mg/L, respectively. Only AB-1 exhibited time-dependent bactericidal activity against drug-susceptible and drug-resistant mycobacteria, including a fluoroquinolone-resistant strain. AB-1 had potent activity in the low oxygen recovery assay model for non-replicating persistent Mtb. Additionally, AB-1 has no interaction with isoniazid and rifampicin, and has no cross-resistance with fluoroquinolones. In a murine model of TB, AB-1 significantly reduced lung cfu counts in a dose-dependent manner. Aminobenzimidazole inhibitors of GyrB exhibit many of the characteristics required for their consideration as a potential front-line antimycobacterial therapeutic.

2 June 2015 in ACS Medicinal Chemistry Letters
Verified
Journal Article
Closed access
KSKoneni V. Sashidhara
Koneni V. Sashidhara
KRK. Bhaskara Rao
K. Bhaskara Rao
PKPragati Kushwaha
Pragati Kushwaha
RMRam K. Modukuri
Ram K. Modukuri
PSPratiksha Singh
Pratiksha Singh
MPMukesh Pasupuleti
Mukesh Pasupuleti

11 April 2011 in Journal of Antimicrobial Chemotherapy
Verified
Journal Article
Open access
PDF file
SCSidharth Chopra
Sidharth Chopra
KMKaren Matsuyama
Karen Matsuyama
CHChristopher Hutson
Christopher Hutson
PMPeter Madrid
Peter Madrid
Rapidly growing mycobacteria have long been neglected in drug discovery efforts and this neglect is reflected in the paucity of therapeutic options available for diseases resulting from these infections. The purpose of this work is to identify new candidate drugs for treating non-tuberculous mycobacteria (NTM) by testing FDA-approved drugs for antimicrobial activity against Mycobacterium abscessus and Mycobacterium chelonae, two emerging NTM drug-resistant pathogens. In this study, we screened 1040 FDA-approved drugs against M. abscessus and M. chelonae. Of the drugs screened, 32 compounds exhibited significant antimicrobial activity, with an MIC ≤8 mg/L, against M. chelonae, while only 7 compounds showed such activity against M. abscessus. Notably, neostigmine bromide and cinnarizine exhibited highly significant antimicrobial activity against M. chelonae, but had little potency against M. abscessus. Metronidazole and puromycin were the only drugs that acted equipotently against both strains, in decreasing order of effectiveness. The dearth of identified compounds active against M. abscessus exemplifies its ability to resist drugs as well as the resilience of rapidly growing NTM. Repurposing of approved drugs is a viable alternative to de novo drug discovery and development.

1 December 2020 in European Journal of Medicinal Chemistry
Verified
Journal Article
Closed access
PRPreeti Rana
Preeti Rana
SGShaik Mahammad Ghouse
Shaik Mahammad Ghouse
RARavikumar Akunuri
Ravikumar Akunuri
YMY.V. Madhavi
Y.V. Madhavi
SCSidharth Chopra
Sidharth Chopra
SNSrinivas Nanduri
Srinivas Nanduri