Alex Samoshkin

Dr. Alex Samoshkin

Clinical School, University of Cambridge, Cambridge, Cambridgeshire, UK
orcid

Research Focus & Metrics

Academic Career Length

18Years (2009-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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7 August 2017 in Journal of Clinical Investigation
Verified
Journal Article
Open access
PDF file
LMLoren J. Martin
Loren J. Martin
SSShad B. Smith
Shad B. Smith
AKArkady Khoutorsky
Arkady Khoutorsky
CMClaire A. Magnussen
Claire A. Magnussen
ASAlex Samoshkin
Alex Samoshkin
LDLuda Diatchenko
Luda Diatchenko
The EGFR belongs to the well-studied ErbB family of receptor tyrosine kinases. EGFR is activated by numerous endogenous ligands that promote cellular growth, proliferation, and tissue regeneration. In the present study, we have demonstrated a role for EGFR and its natural ligand, epiregulin (EREG), in pain processing. We show that inhibition of EGFR with clinically available compounds strongly reduced nocifensive behavior in mouse models of inflammatory and chronic pain. EREG-mediated activation of EGFR enhanced nociception through a mechanism involving the PI3K/AKT/mTOR pathway and matrix metalloproteinase-9. Moreover, EREG application potentiated capsaicin-induced calcium influx in a subset of sensory neurons. Both the EGFR and EREG genes displayed a genetic association with the development of chronic pain in several clinical cohorts of temporomandibular disorder. Thus, EGFR and EREG may be suitable therapeutic targets for persistent pain conditions.

3 January 2019 in Pain
Verified
Journal Article
Closed access
MPMarc Parisien
Marc Parisien
ASAlex Samoshkin
Alex Samoshkin
STShannon N. Tansley
Shannon N. Tansley
MPMarjo H. Piltonen
Marjo H. Piltonen
LMLoren J. Martin
Loren J. Martin
LDLuda Diatchenko
Luda Diatchenko
Chronic pain is a debilitating and poorly treated condition whose underlying mechanisms are poorly understood. Nerve injury and inflammation cause alterations in gene expression in tissues associated with pain processing, supporting molecular and cellular mechanisms that maintain painful states. However, it is not known whether transcriptome changes can be used to reconstruct a molecular pathophysiology of pain. In the current study, we identify molecular pathways contributing to chronic pain states through the analysis of global changes in the transcriptome of dorsal root ganglia, spinal cord, brain, and blood in mouse assays of nerve injury– and inflammation-induced pain. Comparative analyses of differentially expressed genes identified substantial similarities between 2 animal pain assays and with human low-back pain. Furthermore, the extracellular matrix (ECM) organization has been found the most commonly regulated pathway across all tested tissues in the 2 animal assays. Examination of human genome-wide association study data sets revealed an overrepresentation of differentially expressed genes within the ECM organization pathway in single nucleotide polymorphisms most strongly associated with human back pain. In summary, our comprehensive transcriptomics analysis in mouse and human identified ECM organization as a central molecular pathway in the development of chronic pain.

28 August 2009 in PLOS ONE
Verified
Journal Article
Open access
PDF file
ASAlex Samoshkin
Alex Samoshkin
AAAlexei Arnaoutov
Alexei Arnaoutov
LJLars E. T. Jansen
Lars E. T. Jansen
IOIlia Ouspenski
Ilia Ouspenski
LDLouis Dye
Louis Dye
ASAlexander Strunnikov
Alexander Strunnikov
Condensins I and II in vertebrates are essential ATP-dependent complexes necessary for chromosome condensation in mitosis. Condensins depletion is known to perturb structure and function of centromeres, however the mechanism of this functional link remains elusive. Depletion of condensin activity is now shown to result in a significant loss of loading of CENP-A, the histone H3 variant found at active centromeres and the proposed epigenetic mark of centromere identity. Absence of condensins and/or CENP-A insufficiency produced a specific kinetochore defect, such that a functional mitotic checkpoint cannot prevent chromosome missegregation resulting from improper attachment of sister kinetochores to spindle microtubules. Spindle microtubule-dependent deformation of both inner kinetochores and the HEC1/Ndc80 microtubule-capturing module, then results in kinetochore separation from the Aurora B pool and ensuing reduced kinase activity at centromeres. Moreover, recovery from mitosis-inhibition by monastrol revealed a high incidence of merotelic attachment that was nearly identical with condensin depletion, Aurora B inactivation, or both, indicating that the Aurora B dysfunction is the key defect leading to chromosome missegregation in condensin-depleted cells. Thus, beyond a requirement for global chromosome condensation, condensins play a pivotal role in centromere assembly, proper spatial positioning of microtubule-capturing modules and positioning complexes of the inner centromere versus kinetochore plates.

26 August 2010 in DNA Research
Verified
Journal Article
Open access
PDF file
YIYuichi Iida
Yuichi Iida
JKJung-Hyun Kim
Jung-Hyun Kim
YKYasuhiro Kazuki
Yasuhiro Kazuki
HHHidetoshi Hoshiya
Hidetoshi Hoshiya
MTMasato Takiguchi
Masato Takiguchi
MOMitsuo Oshimura
Mitsuo Oshimura
Human artificial chromosomes (HACs), which carry a fully functional centromere and are maintained as a single-copy episome, are not associated with random mutagenesis and offer greater control over expression of ectopic genes on the HAC. Recently, we generated a HAC with a conditional centromere, which includes the tetracycline operator (tet-O) sequence embedded in the alphoid DNA array. This conditional centromere can be inactivated, loss of the alphoidtet-O (tet-O HAC) by expression of tet-repressor fusion proteins. In this report, we describe adaptation of the tet-O HAC vector for gene delivery and gene expression in human cells. A loxP cassette was inserted into the tet-O HAC by homologous recombination in chicken DT40 cells following a microcell-mediated chromosome transfer (MMCT). The tet-O HAC with the loxP cassette was then transferred into Chinese hamster ovary cells, and EGFP transgene was efficiently and accurately incorporated into the tet-O HAC vector. The EGFP transgene was stably expressed in human cells after transfer via MMCT. Because the transgenes inserted on the tet-O HAC can be eliminated from cells by HAC loss due to centromere inactivation, this HAC vector system provides important novel features and has potential applications for gene expression studies and gene therapy.

15 August 2011 in Cell Cycle
Verified
Journal Article
Closed access
PDF file
TEThomas Ebersole
Thomas Ebersole
JKJung-Hyun Kim
Jung-Hyun Kim
ASAlex Samoshkin
Alex Samoshkin
NKNatalay Kouprina
Natalay Kouprina
APAdam Pavlicek
Adam Pavlicek
VLVladimir Larionov
Vladimir Larionov
It is a well-established fact that the tRNA genes in yeast can function as chromatin barrier elements. However, so far there is no experimental evidence that tRNA and other Pol III-transcribed genes exhibit barrier activity in mammals. This study utilizes a recently developed reporter gene assay to test a set of Pol III-transcribed genes and gene clusters with variable promoter and intergenic regions for their ability to prevent heterochromatin-mediated reporter gene silencing in mouse cells. The results show that functional copies of mouse tRNA genes are effective barrier elements. The number of tRNA genes as well as their orientation influence barrier function. Furthermore, the DNA sequence composition of intervening and flanking regions affects barrier activity of tRNA genes. Barrier activity was maintained for much longer time when the intervening and flanking regions of tRNA genes were replaced by AT-rich sequences, suggesting a negative role of DNA methylation in the establishment of a functional barrier. Thus, our results suggest that tRNA genes are essential elements in establishment and maintenance of chromatin domain architecture in mammalian cells.

29 June 2012 in ACS Synthetic Biology
Verified
Journal Article
Closed access
NKNatalay Kouprina
Natalay Kouprina
ASAlex Samoshkin
Alex Samoshkin
IEIndri Erliandri
Indri Erliandri
MNMegumi Nakano
Megumi Nakano
HLHee-Sheung Lee
Hee-Sheung Lee
VLVladimir Larionov
Vladimir Larionov