Ian Johnson

Dr. Ian Johnson


Research Focus & Metrics

Academic Career Length

24Years (2003-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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7 April 2008 in Australian Journal of Experimental Agriculture
Verified
Journal Article
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IJIan Johnson
Ian Johnson
DCD. F. Chapman
D. F. Chapman
VSVal Snow
Val Snow
RER. J. Eckard
R. J. Eckard
APA. J. Parsons
A. J. Parsons
Brendan CullenBrendan Cullen
Brendan Cullen
DairyMod and EcoMod, which are biophysical pasture-simulation models for Australian and New Zealand grazing systems, are described. Each model has a common underlying biophysical structure, with the main differences being in their available management options. The third model in this group is the SGS Pasture Model, which has been previously described, and these models are referred to collectively as ‘the model’. The model includes modules for pasture growth and utilisation by grazing animals, water and nutrient dynamics, animal physiology and production and a range of options for pasture management, irrigation and fertiliser application. Up to 100 independent paddocks can be defined to represent spatial variation within a notional farm. Paddocks can have different soil types, nutrient status, pasture species, fertiliser and irrigation management, but are subject to the same weather. Management options include commonly used rotational grazing management strategies and continuous grazing with fixed or variable stock numbers. A cutting regime simulates calculation of seasonal pasture growth rates. The focus of the present paper is on recent developments to the management routines and nutrient dynamics, including organic matter, inorganic nutrients, leaching and gaseous nitrogen losses, and greenhouse gases. Some model applications are presented and the role of the model in research projects is discussed.

16 September 2003 in Australian Journal of Experimental Agriculture
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Journal Article
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IJIan Johnson
Ian Johnson
GLG. M. Lodge
G. M. Lodge
RWR. E. White
R. E. White
A biophysical simulation model (the Sustainable Grazing Systems Pasture Model) was developed as an integral part of the Sustainable Grazing Systems National Experiment. It was developed to meet the needs of the researchers both for analysing data and processes at individual sites, and for simulating the outcome of these processes operating in generic pasture systems on a range of soil types, under specific grazing managements. The model was designed to reside on the desktops of individual researchers and for those researchers to be part of its development process. The Sustainable Grazing Systems Pasture Model incorporates the following: a physiological model of pasture species herbage accumulation in response to climatic conditions; the water balance including evapotranspiration, runoff (surface and subsurface), infiltration and drainage; pasture utilisation by grazing animals; a metabolisable energy-based animal growth model; and organic matter and inorganic nutrient dynamics (for nitrogen, phosphorus, potassium and sulfur) including plant uptake, adsorption, leaching, nitrogen fixation by legumes, and atmospheric nitrogen losses. A range of grazing options (set-stocking, rotational grazing and continuous grazing at a variable rate) is available for ewes and lambs, and wethers. Each of the main modules (water, nutrients, pastures and animals) is interconnected. To avoid bias in the influence of any one module, each is described at about the same level of complexity, with the description of any process being restricted to about 5 parameters. The model is hierarchical in structure and most processes are described in terms of a series of fluxes (or, more specifically, flux densities) that have dimensions of amount per area per time. The model can be closely linked to a database specifically developed for the Sustainable Grazing Systems National Experiment to allow easy importing and exporting of climate and experimental data for comparison with model output. This paper gives an overview of the model structure and its output, the process that was used for its development within Sustainable Grazing Systems, and its use by the Sustainable Grazing Systems sites and themes. Comments are provided on the implementation of the development process to assist future programs using a similar approach.

22 September 2010 in Annals of Botany
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IJIan Johnson
Ian Johnson
JTJohn H. M. Thornley
John H. M. Thornley
JFJonathan M. Frantz
Jonathan M. Frantz
BBBruce Bugbee
Bruce Bugbee
The distribution of photosynthetic enzymes, or nitrogen, through the canopy affects canopy photosynthesis, as well as plant quality and nitrogen demand. Most canopy photosynthesis models assume an exponential distribution of nitrogen, or protein, through the canopy, although this is rarely consistent with experimental observation. Previous optimization schemes to derive the nitrogen distribution through the canopy generally focus on the distribution of a fixed amount of total nitrogen, which fails to account for the variation in both the actual quantity of nitrogen in response to environmental conditions and the interaction of photosynthesis and respiration at similar levels of complexity. A model of canopy photosynthesis is presented for C3 and C4 canopies that considers a balanced approach between photosynthesis and respiration as well as plant carbon partitioning. Protein distribution is related to irradiance in the canopy by a flexible equation for which the exponential distribution is a special case. The model is designed to be simple to parameterize for crop, pasture and ecosystem studies. The amount and distribution of protein that maximizes canopy net photosynthesis is calculated. The optimum protein distribution is not exponential, but is quite linear near the top of the canopy, which is consistent with experimental observations. The overall concentration within the canopy is dependent on environmental conditions, including the distribution of direct and diffuse components of irradiance. The widely used exponential distribution of nitrogen or protein through the canopy is generally inappropriate. The model derives the optimum distribution with characteristics that are consistent with observation, so overcoming limitations of using the exponential distribution. Although canopies may not always operate at an optimum, optimization analysis provides valuable insight into plant acclimation to environmental conditions. Protein distribution has implications for the prediction of carbon assimilation, plant quality and nitrogen demand.

1 December 2012 in Journal of Animal Science
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IJIan Johnson
Ian Johnson
JFJ. France
J. France
JTJ. H. M. Thornley
J. H. M. Thornley
MBMatthew Bell
Matthew Bell
RER. J. Eckard
R. J. Eckard
A generic daily time-step model of animal growth and metabolism for cattle and sheep is described. It includes total BW as well as protein, water, and fat components, and also energy components associated with the growth of protein and fat, and activity costs. Protein decay is also incorporated, along with the energy costs of resynthesising degraded protein. Protein weight is taken to be the primary indicator of metabolic state, and fat is regarded as a potential source of metabolic energy for physiological processes such as the resynthesis of degraded protein. Normal weight is defined as maximum protein and the associated fat component so that if the BW of the animal exceeds the normal value, all excess weight is in the form of fat. It is assumed that the normal fat fraction increases from birth to maturity. There are relatively few parameters, all of which have a reasonable physiological interpretation, which helps simplify choosing parameters for different animal types and breeds. Simulations for growing and mature cattle and sheep in response to varying available ME are presented and comparisons with empirical curves reported in the literature for body composition are in excellent agreement. Copyright © 2013. American Society of Animal Science .

1 February 2016 in Journal of Dairy Science
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Journal Article
Closed access
IJIan Johnson
Ian Johnson
JFJ. France
J. France
Brendan CullenBrendan Cullen
Brendan Cullen
A generic daily time-step model of a dairy cow, designed to be included in whole-system pasture simulation models, is described that includes growth, milk production, and lactation in relation to energy and nitrogen dynamics. It is a development of a previously described animal growth and metabolism model that describes animal body composition in terms of protein, water, and fat, and energy dynamics in relation to growth requirements, resynthesis of degraded protein, and animal activity. This is further developed to include lactation and fetal growth. Intake is calculated in relation to stage of lactation, pasture availability, supplementary feed, and feed quality. Energy costs associated with urine N excretion and methane fermentation are accounted for. Milk production and fetal growth are then calculated in relation to the overall energy and nitrogen dynamics. The general behavior of the model is consistent with expected characteristics. Simulations using the model as part of a whole-system pasture simulation model (DairyMod) are compared with experimental data where good agreement between pasture, concentrate and forage intake, as well as milk production over 3 consecutive lactation cycles, is observed. The model is shown to be well suited for inclusion in large-scale system simulation models.

25 September 2012 in Agriculture
Verified
Journal Article
Open access
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MBMatthew Bell
Matthew Bell
Brendan CullenBrendan Cullen
Brendan Cullen
IJIan Johnson
Ian Johnson
RERichard Eckard
Richard Eckard
The aim of this study was to assess the effect that the randomised versus even distribution of excreta (dung and urine) may have on modelling nitrogen (N) losses by leaching, volatilisation and denitrification from a grazing system. A range of stock densities (from 200 to 2000 sheep/ha, equivalent to an annual stocking rate of 3 to 33 dry sheep equivalent (DSE)/ha respectively) were simulated to represent an increasing application of N excreta to a grazed 1 hectare area either distributed randomly or uniformly. This study found that the proportion of annual N inputs lost by denitrification were significantly lower and leaching N losses were higher at high stocking densities compared to if excreta was distributed uniformly. The results of this study indicate that N losses from a sheep grazing system could be adequately modelled assuming uniform distribution of excreta at stocking densities up to 1200 sheep/ha (equivalent to an annual stocking rate of 20 DSE/ha). But at higher stock densities, when N loads are high, the spatial distribution of excreta is important and models need to explicitly deal with the distribution of dung and urine N returns.