The ADAMTS Like 2 (ADAMTSL2) mutation has been identified to be associated with different human genetic diseases. The role of ADAMTSL2 is unclear in colorectal cancer (CRC). The study investigated the expression of ADAMTSL2 in both pan cancer and CRC, using data from The Cancer Genome Atlas (TCGA) database to assess its diagnostic value. The study examined the correlation between ADAMTSL2 expression levels and clinical characteristics, as well as prognosis in CRC. The study explored potential regulatory networks involving ADAMTSL2, including its association with immune infiltration, immune checkpoint genes, tumor mutational burden (TMB) / microsatellite instability (MSI), tumor stemness index (mRNAsi), and drug sensitivity in CRC. ADAMTSL2 expression was validated using GSE71187 and quantitative real-time PCR (qRT-PCR). ADAMTSL2 was aberrantly expressed in pan cancer and CRC. An increased level of ADAMTSL2 expression in patients with CRC was significantly associated with the pathologic N stage (p< 0.001), pathologic stage (p< 0.001), age (p< 0.001), histological type (p< 0.001), and neoplasm type (p= 0.001). The high expression of ADAMTSL2 in patients with CRC was found to be significantly associated with a poorer overall survival (OS) (HR: 1.67; 95% CI: 1.18–2.38;p= 0.004), progression-free survival (PFS) (HR: 1.55; 95% CI: 1.14–2.11;p= 0.005) and disease-specific survival (DSS) (HR: 1.83; 95% CI: 1.16–2.89;p= 0.010). The expression of ADAMTSL2 in patients with CRC (p= 0.009) was identified as an independent prognostic determinant. ADAMTSL2 was associated with extracellular matrix receptor (ECM-receptor) interaction, transforming growth factor β (TGF-β) signaling pathway, and more. ADAMTSL2 expression was correlated with immune infiltration, immune checkpoint genes, TMB / MSI and mRNAsi in CRC. ADAMTSL2 expression was significantly and negatively correlated with 1-BET-762, Trametinib, and WZ3105 in CRC. ADAMTSL2 was significantly upregulated in CRC cell lines. The high expression of ADAMTSL2 is significantly correlated with lower OS and immune infiltration of CRC. ADAMTSL2 may be a potential prognostic biomarker and immunotherapeutic target for CRC patients.

Straw return (SR) has been widely recommended as a conservation agricultural practice in China. However, the effects of SR on crop yield and soil properties are inconsistent across studies of rice–oilseed rape cropping systems in China. This study aimed to investigate the effects of SR on crop yield and soil nutrient content in a rice–oilseed rotation system, and to understand the mechanism of straw return on the difference in yield increases between rice and oilseed rape. Additionally, suitable climate factors, soil properties, and agricultural practices were identified to achieve maximum increases in yield and soil nutrients in a rice–oilseed rotation under SR. This paper is based on a meta-analysis of 1322 observations from 83 peer-reviewed studies to evaluate the effects of climate, initial soil conditions, and agricultural management practices on rice and oilseed rape yields and soil nutrients under SR. The results showed that the responses of oilseed rape and rice yield remained positive, with 12.37% and 6.54% increases, and were significantly higher under SR than the control (no SR). Moreover, SR significantly increased the contents of several soil nutrients (soil organic carbon (SOC), total nutrients, available nutrients) and microbial biomass carbon (MBC) and nitrogen (MBN). Interestingly, the increase in crop yields was attributed to the increase in SOC, total nitrogen, and available potassium. Additionally, the increase in yields was mainly affected by climate factors, initial soil properties, and agronomic practices. For example, both mean annual temperature (MAT) and mean annual precipitation (MAP) had a positive correlation with crop yield increases under SR (p < 0.01). Initial soil conditions such as low SOC and total nitrogen content were more suitable for increased rice yield under SR, while the opposite was true for increased oilseed rape yield. Without fertilization, the SR did not significantly improve crop yield and soil nutrients, while it was more pronounced with N fertilization at 150–180 kg hm⁻². The positive effect of SR on crop yields is more evident with plowing tillage, whereas the SR caused the highest increase in soil nutrients with the no-tillage condition. These findings have important implications for further improving crop yield, SOC, and soil nutrients in the Chinese rice–oilseed cropping system through straw return.

The SAUR (small auxin-up RNA) family constitutes a category of genes that promptly respond to the hormone auxin and play a pivotal role in diverse biological processes encompassing plant growth and the response to abiotic stress. Santalum album L., a semi-parasitic evergreen tree, is renowned for its economically valuable essential oils, positioning it among the most prized tree species. In this study, a meticulous identification and comprehensive analysis of 43 SAUR genes was conducted within S. album. Based on phylogenetic relationships, the SaSAUR genes were systematically categorized into five groups. A collinearity analysis revealed intriguing insights, disclosing 14 segmental duplications and 9 tandem duplications within the SaSAUR genes, emphasizing the pivotal role of duplication in the expansion of this gene family. Noteworthy variations in the expression levels of SaSAUR genes were observed by delving into the SaSAUR transcriptome data from various tissues, including leaves, roots, and heartwood, as well as under salt-stress conditions. Notably, SaSAUR08 and SaSAUR13 were significantly upregulated in heartwood compared with roots and leaves, while SaSAUR18 was markedly more expressed in roots compared with heartwood and leaves. Furthermore, SaSAUR27 and SaSAUR28 were found to respond closely to salt stress, hinting at their potential involvement in the salt-stress response mechanism. This research offers a comprehensive investigation of SAUR genes in S. album and establishes a foundation for future exploration of the SAUR gene family, particularly its relation to growth and salt-stress responses.

Salinization is increasingly a major factor limiting production worldwide. Revealing the mechanism of salt tolerance could help to create salt-tolerant crops and improve their yields. We reported a chromosome-scale genome sequence of the halophyte turfgrass Paspalum vaginatum , and provided structural evidence that it shared a common ancestor with Z. mays and S. bicolor . A total of 107 P. vaginatum germplasms were divided into two groups (China and foreign group) based on the re-sequenced data, and the grouping findings were consistent with the geographical origin. Genome-wide association study (GWAS) of visually scored wilting degree and withering rates identified highly significant QTL on chromosome 6. Combination with RNA-seq, we identified a significantly up-regulated gene under salt stress, which encodes ‘High-affinity K ⁺ Transporter 7’ ( PvHKT7 ), as strong candidates underlying the QTL. Overexpression of this gene in Arabidopsis thaliana significantly enhanced salt tolerance by increasing K ⁺ absorption. This study adds new insights into salt-stress adaptation of P. vaginatum and serve as a resource for salt-tolerant improvement of grain crops.

Dalbergia odorifera is a valuable material used in the crafting of luxury furniture, and the chemical constituents from heartwood possess significant medicinal value. The WRKY gene family, one of the most extensively studied gene families, plays an important role in plants. However, a comprehensive genome-wide identification of the WRKY gene family in D. odorifera has not been reported yet. In this study, a total of 99 WRKY genes were identified in D. odorifera. The DoWRKY genes were categorized into three primary groups with five subgroups. A collinearity analysis revealed 38 segmental duplications and 3 tandem duplications within the DoWRKY genes, indicating the pivotal role of segmental duplication in gene family expansion. Through the analysis of DoWRKY transcriptomic data across diverse tissues and under wounding stress, we found that only eight genes were universally expressed, while a subset displayed distinct tissue-specific patterns. Notably, DoWRKY41 was exclusively expressed in leaves; DoWRKY04 was solely in roots; and DoWRKY17, DoWRKY28, DoWRKY47, and DoWRKY67 were uniquely in flowers. Furthermore, we identified 24 WRKY proteins that tightly respond to wounding stress (20 upregulated; 4 downregulated). This comprehensive investigation offered valuable insights into the WRKY gene family of D. odorifera, serving as a foundational resource for forthcoming explorations into the functional roles of these genes amid wounding stress.