Rasime Demirel

Dr. Rasime Demirel

orcid

Research Focus & Metrics

Academic Career Length

23Years (2004-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 September 2017 in Studies in Mycology
Verified
Journal Article
Open access
JCJuan Chen
Juan Chen
Vit HubkaVit Hubka
Vit Hubka
JFJens Frisvad
Jens Frisvad
CVC.M. Visagie
C.M. Visagie
JHJ. Houbraken
J. Houbraken
RSR.A. Samson
R.A. Samson
Aspergillus section Aspergillus (formerly the genus Eurotium) includes xerophilic species with uniseriate conidiophores, globose to subglobose vesicles, green conidia and yellow, thin walled eurotium-like ascomata with hyaline, lenticular ascospores. In the present study, a polyphasic approach using morphological characters, extrolites, physiological characters and phylogeny was applied to investigate the taxonomy of this section. Over 500 strains from various culture collections and new isolates obtained from indoor environments and a wide range of substrates all over the world were identified using calmodulin gene sequencing. Of these, 163 isolates were subjected to molecular phylogenetic analyses using sequences of ITS rDNA, partial β-tubulin (BenA), calmodulin (CaM) and RNA polymerase II second largest subunit (RPB2) genes. Colony characteristics were documented on eight cultivation media, growth parameters at three incubation temperatures were recorded and micromorphology was examined using light microscopy as well as scanning electron microscopy to illustrate and characterize each species. Many specific extrolites were extracted and identified from cultures, including echinulins, epiheveadrides, auroglaucins and anthraquinone bisanthrons, and to be consistent in strains of nearly all species. Other extrolites are species-specific, and thus valuable for identification. Several extrolites show antioxidant effects, which may be nutritionally beneficial in food and beverages. Important mycotoxins in the strict sense, such as sterigmatocystin, aflatoxins, ochratoxins, citrinin were not detected despite previous reports on their production in this section. Adopting a polyphasic approach, 31 species are recognized, including nine new species. ITS is highly conserved in this section and does not distinguish species. All species can be differentiated using CaM or RPB2 sequences. For BenA, Aspergillus brunneus and A. niveoglaucus share identical sequences. Ascospores and conidia morphology, growth rates at different temperatures are most useful characters for phenotypic species identification.

1 June 2014 in Studies in Mycology
Verified
Journal Article
Open access
JHJos Houbraken
Jos Houbraken
CVC.M. Visagie
C.M. Visagie
MMM. Meijer
M. Meijer
JFJens Frisvad
Jens Frisvad
PBP.E. Busby
P.E. Busby
RSR.A. Samson
R.A. Samson
Species belonging to Penicillium section Aspergilloides have a world-wide distribution with P. glabrum, P. spinulosum and P. thomii the most well-known species of this section. These species occur commonly and can be isolated from many substrates including soil, food, bark and indoor environments. The taxonomy of these species has been investigated several times using various techniques, but species delimitation remains difficult. In the present study, 349 strains belonging to section Aspergilloides were subjected to multilocus molecular phylogenetic analyses using partial β-tubulin (BenA), calmodulin (CaM) and RNA polymerase II second largest subunit (RPB2) sequences. Section Aspergilloides is subdivided into 12 clades and 51 species. Twenty-five species are described here as new and P. yezoense, a species originally described without a Latin diagnosis, is validated. Species belonging to section Aspergilloides are phenotypically similar and most have monoverticillate conidiophores and grow moderately or quickly on agar media. The most important characters to distinguish these species were colony sizes on agar media, growth at 30 °C, ornamentation and shape of conidia, sclerotium production and stipe roughness.

1 March 2015 in European Journal of Medicinal Chemistry
Verified
Journal Article
Closed access
Mehlika Dilek AltıntopMehlika Dilek Altıntop
Mehlika Dilek Altıntop
Ahmet ÖzdemirAhmet Özdemir
Ahmet Özdemir
GTGülhan Turan-Zitouni
Gülhan Turan-Zitouni
SISinem Ilgın
Sinem Ilgın
ÖAÖzlem Atlı
Özlem Atlı
ZKZafer Asım Kaplancıklı
Zafer Asım Kaplancıklı

1 January 2016 in European Journal of Medicinal Chemistry
Verified
Journal Article
Closed access
Mehlika Dilek AltıntopMehlika Dilek Altıntop
Mehlika Dilek Altıntop
ÖAÖzlem Atlı
Özlem Atlı
SISinem Ilgın
Sinem Ilgın
RDRasime Demirel
Rasime Demirel
Ahmet ÖzdemirAhmet Özdemir
Ahmet Özdemir
ZKZafer Asım Kaplancıklı
Zafer Asım Kaplancıklı

1 March 2014 in European Journal of Medicinal Chemistry
Verified
Journal Article
Closed access
Mehlika Dilek AltıntopMehlika Dilek Altıntop
Mehlika Dilek Altıntop
ZKZafer Asım Kaplancıklı
Zafer Asım Kaplancıklı
GÇGülşen Akalın Çiftçi
Gülşen Akalın Çiftçi
RDRasime Demirel
Rasime Demirel

1 February 2004 in Indoor and Built Environment
Verified
Journal Article
Closed access
PDF file
AAAhmet Asan
Ahmet Asan
SISemra Ilhan
Semra Ilhan
BSBurhan Sen
Burhan Sen
IEIsmuhan Potoglu Erkara
Ismuhan Potoglu Erkara
CFCansu Filik
Cansu Filik
STSuleyman Tokur
Suleyman Tokur
The present study investigated the isolation and identification of airborne fungi from three different urban stations located in Eskisehir (Turkey). Air samples were taken by exposing a Petri dish with Rose-Bengal streptomycin agar medium for 15 min and after incubation the number of growing colonies was counted. The sampling procedure for fungi was performed 35 times at the research stations weekly between March and November 2001. A total of 2518 fungal and 465 actinomycetes colonies were counted on 420 Petri plates over a nine-month period. In total, some 20 mould species belonging to 12 genera were isolated. Alternaria alternata, Cladosporium cladosporioides and Scopulariopsis brevicaulis were the most abundant species in the study area (13.66, 5.80 and 5.50% of the total, respectively). Relationships between fungal spore numbers, aerosol air pollutants (that is the particulate matter in the air) and sulphur dioxide together with the meteorological conditions were examined using statistical analysis. Number of fungi and actinomycetes were tested by multivariate analysis (MANOVA) according to the areas and months. Fungal numbers were nonsignificant according to the areas and months (p > 0.05), but the number of actinomycetes recorded was significant (p < 0.01).