High-frequency monitoring of agrometeorological parameters is quintessential in the domain of Precision Agriculture (PA), where timeliness of collected observations and the ability to generate ahead-of-time predictions can substantially impact the crop yield. In this context, state-of-the-art internet-of-things (IoT)-based sensing platforms are often employed to generate, pre-process and assimilate real-time data from heterogeneous sensors and streaming data sources. Simultaneously, Time-Series Forecasting Algorithms (TSFAs) are responsible for generating reliable forecasts with a pre-defined forecast horizon and confidence. These TSFAs often rely on modelling the correlation between endogenous variables, the impact of exogenous variables on latent form and structural properties of data such as autocorrelation, periodicity, trend, pattern, and causality to approximate the model parameters. Traditionally, TSFAs such as the Holt–Winters (HW) and Autoregressive family of models (ARIMA) apply a linear and parametric approach towards model approximation, whilst models like Support Vector Regression (SVRs) and Neural Networks (NNs) adhere to a non-linear, non-parametric approach for modelling the historical data. Recently, Deep-Learning-based TSFAs such as Recurrent Neural Networks (RNNs), and Long-Short-Term-Memory (LSTMS) have gained popularity due to their capability to model long sequences of highly non-linear and stochastic data effectively. However, the evolution of TSFAs for predicting agrometeorological parameters pivots around one-step-ahead forecasting, which often overestimates the performance metrics defined for validating forecast capabilities of potential TSFAs. Hence, this paper attempts to evaluate and compare the performance of different machine learning (ML) and deep learning (DL) based TSFAs under one-step and multi-step-ahead forecast scenarios, thereby estimating the generalization capabilities of TSFA models over unseen data. The data used in this study are collected from an Automatic Weather Station (AWS), sampled at an interval of 15 min, and range over one month. Temperature (T) and Humidity (H) observations from the AWS are further converted into univariate, supervised time-series diurnal data profiles. Finally, walk-forward validation is used to evaluate recursive one-step-ahead forecasts until the desired prediction horizon is achieved. The results show that the Seasonal Auto-Regressive Integrated Moving Average (SARIMA) and SVR models outperform their DL-based counterparts in one-step and multi-step ahead settings with a fixed forecast horizon. This work aims to present a baseline comparison between different TSFAs to assist the process of model selection and facilitate rapid ahead-of-time forecasting for end-user applications.

The rapid development of phenotyping technologies over the last years gave the opportunity to study plant development over time. The treatment of the massive amount of data collected by high-throughput phenotyping (HTP) platforms is however an important challenge for the plant science community. An important issue is to accurately estimate, over time, the genotypic component of plant phenotype. In outdoor and field-based HTP platforms, phenotype measurements can be substantially affected by data-generation inaccuracies or failures, leading to erroneous or missing data. To solve that problem, we developed an analytical pipeline composed of three modules: detection of outliers, imputation of missing values, and mixed-model genotype adjusted means computation with spatial adjustment. The pipeline was tested on three different traits (3D leaf area, projected leaf area, and plant height), in two crops (chickpea, sorghum), measured during two seasons. Using real-data analyses and simulations, we showed that the sequential application of the three pipeline steps was particularly useful to estimate smooth genotype growth curves from raw data containing a large amount of noise, a situation that is potentially frequent in data generated on outdoor HTP platforms. The procedure we propose can handle up to 50% of missing values. It is also robust to data contamination rates between 20 and 30% of the data. The pipeline was further extended to model the genotype time series data. A change-point analysis allowed the determination of growth phases and the optimal timing where genotypic differences were the largest. The estimated genotypic values were used to cluster the genotypes during the optimal growth phase. Through a two-way analysis of variance (ANOVA), clusters were found to be consistently defined throughout the growth duration. Therefore, we could show, on a wide range of scenarios, that the pipeline facilitated efficient extraction of useful information from outdoor HTP platform data. High-quality plant growth time series data is also provided to support breeding decisions. The R code of the pipeline is available at https://github.com/ICRISAT-GEMS/SpaTemHTP.

Insect pests cause significant damage to food production, so early detection and efficient mitigation strategies are crucial. There is a continual shift toward machine learning (ML)‐based approaches for automating agricultural pest detection. Although supervised learning has achieved remarkable progress in this regard, it is impeded by the need for significant expert involvement in labeling the data used for model training. This makes real‐world applications tedious and oftentimes infeasible. Recently, self‐supervised learning (SSL) approaches have provided a viable alternative to training ML models with minimal annotations. Here, we present an SSL approach to classify 22 insect pests. The framework was assessed on raw and segmented field‐captured images using three different SSL methods, Nearest Neighbor Contrastive Learning of Visual Representations (NNCLR), Bootstrap Your Own Latent, and Barlow Twins. SSL pre‐training was done on ResNet‐18 and ResNet‐50 models using all three SSL methods on the original RGB images and foreground segmented images. The performance of SSL pre‐training methods was evaluated using linear probing of SSL representations and end‐to‐end fine‐tuning approaches. The SSL‐pre‐trained convolutional neural network models were able to perform annotation‐efficient classification. NNCLR was the best performing SSL method for both linear and full model fine‐tuning. With just 5% annotated images, transfer learning with ImageNet initialization obtained 74% accuracy, whereas NNCLR achieved an improved classification accuracy of 79% for end‐to‐end fine‐tuning. Models created using SSL pre‐training consistently performed better, especially under very low annotation, and were robust to object class imbalances. These approaches help overcome annotation bottlenecks and are resource efficient.

While study of ocean dynamics usually involves modeling deep ocean variables, monitoring and accurate forecasting of nearshore environments is also critical. However, sensor observations often contain artifacts like long stretches of missing data and noise, typically after an extreme event occurrence or some accidental damage to the sensors. Such data artifacts, if not handled diligently prior to modeling, can significantly impact the reliability of any further predictive analysis. Therefore, we present a framework that integrates data reconstruction of key sea state variables and multi-step-ahead forecasting of current speed from the reconstructed time series for 19 depth levels simultaneously. Using multivariate chained regressions, the reconstruction algorithm rigorously tests from an ensemble of tree-based models (fed only with surface characteristics) to impute gaps in the vertical profiles of the sea state variables down to 20 m deep. Subsequently, a deep encoder–decoder model, comprising multi-head convolutional networks, extracts high-level features from each depth level’s multivariate (reconstructed) input and feeds them to a deep long short-term memory network for 24 h ahead forecasts of current speed profiles. In this work, we utilized Viking buoy data, and demonstrated that with limited training data, we could explain an overall 80% variation in the current speed profiles across the forecast period and the depth levels.