Amanda Rachel Liberman

Ms. Amanda Rachel Liberman

orcid

Research Focus & Metrics

Academic Career Length

10Years (2017-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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31 August 2017 in Scientific Reports
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Journal Article
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ALAmanda Rachel Liberman
Amanda Rachel Liberman
SKSoo Bin Kwon
Soo Bin Kwon
HVHa T. Vu
Ha T. Vu
AFAllan Filipowicz
Allan Filipowicz
AAAhmet Ay
Ahmet Ay
KIKrista K. Ingram
Krista K. Ingram
Generalized anxiety and major depression have become increasingly common in the United States, affecting 18.6 percent of the adult population. Mood disorders can be debilitating, and are often correlated with poor general health, life dissatisfaction, and the need for disability benefits due to inability to work. Recent evidence suggests that some mood disorders have a circadian component, and disruptions in circadian rhythms may even trigger the development of these disorders. However, the molecular mechanisms of this interaction are not well understood. Polymorphisms in a circadian clock-related gene, PER3, are associated with behavioral phenotypes (extreme diurnal preference in arousal and activity) and sleep/mood disorders, including seasonal affective disorder (SAD). Here we show that two PER3 mutations, a variable number tandem repeat (VNTR) allele and a single-nucleotide polymorphism (SNP), are associated with diurnal preference and higher Trait-Anxiety scores, supporting a role for PER3 in mood modulation. In addition, we explore a potential mechanism for how PER3 influences mood by utilizing a comprehensive circadian clock model that accurately predicts the changes in circadian period evident in knock-out phenotypes and individuals with PER3-related clock disorders.

3 April 2018 in Journal of Biological Rhythms
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Journal Article
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ALAmanda Rachel Liberman
Amanda Rachel Liberman
LHLumbardh Halitjaha
Lumbardh Halitjaha
AAAhmet Ay
Ahmet Ay
KIKrista K. Ingram
Krista K. Ingram
Anxiety and other mood disorders, such as major depressive disorder (MDD) and seasonal affective disorder (SAD), affect nearly one-fifth of the global population and disproportionately affect young adults. Individuals affected by mood disorders are frequently plagued by sleep and circadian problems, and recent genetic studies provide ample support for the association of circadian and sleep syndromes with depression and anxiety. Mathematical modeling has been crucial in understanding some of the essential features of the mammalian circadian clock and is now a vital tool for dissecting how circadian genes regulate the molecular mechanisms that influence mood. Here, we model the effect of five clock gene polymorphisms, previously linked to mood disorders, on circadian gene expression and, ultimately, on the period length and amplitude of the clock, two parameters that dictate the phase, or alignment, of the clock relative to the environment. We then test whether these gene variants are associated with circadian phenotypes (Horne-Ostberg Morningness-Eveningness scores) and well-established measures of depression (Beck Depression Inventory) and anxiety (State-Trait Anxiety Inventory) in a population of undergraduates (n = 546). In this population, we find significant allelic and/or genotypic associations between CRY2 and two PER3 variants and diurnal preference. The PER3 length polymorphism (rs57875989) was significantly associated with depression in this sample, and individuals homozygous for the PER3 single nucleotide polymorphism (SNP) (rs228697) reported significantly higher anxiety. Our simple model satisfies available experimental knockdown conditions as well as existing data on clock polymorphisms associated with mood. In addition, our model enables us to predict circadian phenotypes (e.g., altered period length, amplitude) associated with mood disorders in order to identify critical effects of clock gene mutations on CRY/BMAL binding and to predict that the intronic SNPs studied represent gain-of-function mutations, causing increased transcription rate. Given the user-friendly structure of our model, we anticipate that it will be useful for further study of the relationships among clock polymorphisms, circadian misalignment, and mood disorders.

7 April 2021 in International Journal of Drug Policy
Verified
Journal Article
Closed access
ALAmanda Rachel Liberman
Amanda Rachel Liberman
DBDaniel J. Bromberg
Daniel J. Bromberg
LALyuba Azbel
Lyuba Azbel
JRJulia Rozanova
Julia Rozanova
LMLynn Madden
Lynn Madden
FAFrederick L. Altice
Frederick L. Altice

10 September 2023 in Biomolecules
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Journal Article
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BGBryan Grimes
Bryan Grimes
WJWalter Jacob
Walter Jacob
ALAmanda Rachel Liberman
Amanda Rachel Liberman
NKNathan Jihoo Kim
Nathan Jihoo Kim
XZXiaohong Zhao
Xiaohong Zhao
LGLois Greene
Lois Greene
The Sup35 prion protein of budding yeast has been reported to undergo phase separation to form liquid droplets both at low pH in vitro and when energy depletion decreases the intracellular pH in vivo. It also has been shown using purified proteins that this phase separation is driven by the prion domain of Sup35 and does not re-quire its C-terminal domain. In contrast, we now find that a Sup35 fragment consisting of only the N-terminal prion domain and the M-domain does not phase separate in vivo; this phase separation of Sup35 requires the C-terminal domain, which binds Sup45 to form the translation termination complex. The phase-separated Sup35 not only colocalizes with Sup45 but also with Pub1, a stress granule marker protein. In addition, like stress granules, phase separation of Sup35 appears to require mRNA since cycloheximide treatment, which inhibits mRNA release from ribosomes, prevents phase separation of Sup35. Finally, unlike Sup35 in vitro, Sup35 condensates do not disassemble in vivo when the intracellular pH is increased. These results suggest that, in energy-depleted cells, Sup35 forms supramolecular assemblies that differ from the Sup35 liquid droplets that form in vitro.

25 October 2022 in PLOS ONE
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Journal Article
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ALAmanda Rachel Liberman
Amanda Rachel Liberman
DBDaniel J. Bromberg
Daniel J. Bromberg
TLTaylor Litz
Taylor Litz
AKAinura Kurmanalieva
Ainura Kurmanalieva
SGSamy Galvez
Samy Galvez
FAFrederick L. Altice
Frederick L. Altice
HIV incidence continues to increase in Eastern Europe and Central Asia (EECA), in large part due to non-sterile injection drug use, especially within prisons. Therefore, medication-assisted therapy with opioid agonists is an evidence-based HIV-prevention strategy. The Kyrgyz Republic offers methadone within its prison system, but uptake remains low. Screening, Brief Intervention, and Referral to Treatment (SBIRT) is a framework for identifying people who would potentially benefit from methadone, intervening to identify OUD as a problem and methadone as a potential solution, and providing referral to methadone treatment. Using an SBIRT framework, we screened for OUD in Kyrgyz prisons among people who were within six months of returning to the community (n = 1118). We enrolled 125 people with OUD in this study, 102 of whom were not already engaged in methadone treatment. We conducted a pre-release survey followed by a brief intervention (BI) to address barriers to methadone engagement. Follow-up surveys immediately after the intervention and at 1 month, 3 months, and 6 months after prison release assessed methadone attitudes and uptake. In-depth qualitative interviews with 12 participants explored factors influencing methadone utilization during and after incarceration. Nearly all participants indicated favorable attitudes toward methadone both before and after intervention in surveys; however, interest in initiating methadone treatment remained very low both before and after the BI. Qualitative findings identified five factors that negatively influence methadone uptake, despite expressed positive attitudes toward methadone: (1) interpersonal relationships, (2) interactions with the criminal justice system, (3) logistical concerns, (4) criminal subculture, and (5) health-related concerns.

1 May 2022 in Journal of Substance Abuse Treatment
Verified
Journal Article
Closed access
GOGeorge L. O'HAra
George L. O'HAra
ALAmanda Rachel Liberman
Amanda Rachel Liberman
MPMaxim Polonsky
Maxim Polonsky
LALyuba Azbel
Lyuba Azbel
RMRuthanne Marcus
Ruthanne Marcus
FAFrederick L. Altice
Frederick L. Altice