Maksim Kulichenko

Dr. Maksim Kulichenko


Research Focus & Metrics

Academic Career Length

5Years (2022-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
21 November 2024 in Chemical Reviews
Verified
Journal Article
Open access
MKMaksim Kulichenko
Maksim Kulichenko
BNBenjamin Nebgen
Benjamin Nebgen
NLNicholas Lubbers
Nicholas Lubbers
JSJustin S. Smith
Justin S. Smith
KBKipton Barros
Kipton Barros
STSergei Tretiak
Sergei Tretiak
The field of data-driven chemistry is undergoing an evolution, driven by innovations in machine learning models for predicting molecular properties and behavior. Recent strides in ML-based interatomic potentials have paved the way for accurate modeling of diverse chemical and structural properties at the atomic level. The key determinant defining MLIP reliability remains the quality of the training data. A paramount challenge lies in constructing training sets that capture specific domains in the vast chemical and structural space. This Review navigates the intricate landscape of essential components and integrity of training data that ensure the extensibility and transferability of the resulting models. We delve into the details of active learning, discussing its various facets and implementations. We outline different types of uncertainty quantification applied to atomistic data acquisition and the correlations between estimated uncertainty and true error. The role of atomistic data samplers in generating diverse and informative structures is highlighted. Furthermore, we discuss data acquisition via modified and surrogate potential energy surfaces as an innovative approach to diversify training data. The Review also provides a list of publicly available data sets that cover essential domains of chemical space.

6 March 2023 in Nature Computational Science
Verified
Journal Article
Open access
PDF file
MKMaksim Kulichenko
Maksim Kulichenko
KBKipton Barros
Kipton Barros
NLNicholas Lubbers
Nicholas Lubbers
YLYing Wai Li
Ying Wai Li
RMRichard Messerly
Richard Messerly
BNBenjamin Nebgen
Benjamin Nebgen
Machine learning (ML) models, if trained to data sets of high-fidelity quantum simulations, produce accurate and efficient interatomic potentials. Active learning (AL) is a powerful tool to iteratively generate diverse data sets. In this approach, the ML model provides an uncertainty estimate along with its prediction for each new atomic configuration. If the uncertainty estimate passes a certain threshold, then the configuration is included in the data set. Here we develop a strategy to more rapidly discover configurations that meaningfully augment the training data set. The approach, uncertainty-driven dynamics for active learning (UDD-AL), modifies the potential energy surface used in molecular dynamics simulations to favor regions of configuration space for which there is large model uncertainty. The performance of UDD-AL is demonstrated for two AL tasks: sampling the conformational space of glycine and sampling the promotion of proton transfer in acetylacetone. The method is shown to efficiently explore the chemically relevant configuration space, which may be inaccessible using regular dynamical sampling at target temperature conditions.

25 August 2022 in Nature Reviews Chemistry
Verified
Journal Article
Closed access
PDF file
NFNikita Fedik
Nikita Fedik
RZRoman Zubatyuk
Roman Zubatyuk
MKMaksim Kulichenko
Maksim Kulichenko
NLNicholas Lubbers
Nicholas Lubbers
JSJustin S. Smith
Justin S. Smith
STSergei Tretiak
Sergei Tretiak

15 September 2023 in The Journal of Chemical Physics
Verified
Journal Article
Open access
PDF file
NFNikita Fedik
Nikita Fedik
BNBenjamin Nebgen
Benjamin Nebgen
NLNicholas Lubbers
Nicholas Lubbers
KBKipton Barros
Kipton Barros
MKMaksim Kulichenko
Maksim Kulichenko
STSergei Tretiak
Sergei Tretiak
Catalyzed by enormous success in the industrial sector, many research programs have been exploring data-driven, machine learning approaches. Performance can be poor when the model is extrapolated to new regions of chemical space, e.g., new bonding types, new many-body interactions. Another important limitation is the spatial locality assumption in model architecture, and this limitation cannot be overcome with larger or more diverse datasets. The outlined challenges are primarily associated with the lack of electronic structure information in surrogate models such as interatomic potentials. Given the fast development of machine learning and computational chemistry methods, we expect some limitations of surrogate models to be addressed in the near future; nevertheless spatial locality assumption will likely remain a limiting factor for their transferability. Here, we suggest focusing on an equally important effort—design of physics-informed models that leverage the domain knowledge and employ machine learning only as a corrective tool. In the context of material science, we will focus on semi-empirical quantum mechanics, using machine learning to predict corrections to the reduced-order Hamiltonian model parameters. The resulting models are broadly applicable, retain the speed of semiempirical chemistry, and frequently achieve accuracy on par with much more expensive ab initio calculations. These early results indicate that future work, in which machine learning and quantum chemistry methods are developed jointly, may provide the best of all worlds for chemistry applications that demand both high accuracy and high numerical efficiency.

26 May 2023 in The Journal of Physical Chemistry A
Verified
Journal Article
Closed access
APAnton S. Pozdeev
Anton S. Pozdeev
WCWei-Jia Chen
Wei-Jia Chen
HCHyun Wook Choi
Hyun Wook Choi
MKMaksim Kulichenko
Maksim Kulichenko
DYDao-Fu Yuan
Dao-Fu Yuan
LWLai-Sheng Wang
Lai-Sheng Wang

10 May 2023 in Journal of Chemical Theory and Computation
Verified
Journal Article
Closed access
MKMaksim Kulichenko
Maksim Kulichenko
KBKipton Barros
Kipton Barros
NLNicholas Lubbers
Nicholas Lubbers
NFNikita Fedik
Nikita Fedik
GZGuoqing Zhou
Guoqing Zhou
ANAnders M. N. Niklasson
Anders M. N. Niklasson