Genomic selection has been proposed for the mitigation of methane (CH₄) emissions by cattle because there is considerable variability in CH₄ emissions between individuals fed on the same diet. The genome-wide association study (GWAS) represents an important tool for the detection of candidate genes, haplotypes or single nucleotide polymorphisms (SNP) markers related to characteristics of economic interest. The present study included information for 280 cows in three dairy production systems in Mexico: 1) Dual Purpose (n = 100), 2) Specialized Tropical Dairy (n = 76), 3) Familiar Production System (n = 104). Concentrations of CH₄ in a breath of individual cows at the time of milking (MEIm) were estimated through a system of infrared sensors. After quality control analyses, 21,958 SNPs were included. Associations of markers were made using a linear regression model, corrected with principal component analyses. In total, 46 SNPs were identified as significant for CH₄ production. Several SNPs associated with CH₄ production were found at regions previously described for quantitative trait loci of composition characteristics of meat, milk fatty acids and characteristics related to feed intake. It was concluded that the SNPs identified could be used in genomic selection programs in developing countries and combined with other datasets for global selection.

Objective: In tropical, subtropical and arid zones, heat stress is the main cause of productivity reduction in cattle. When climate stressors occur, animals become thermal adapted through differential expression of some genes, including heat shock proteins (HSP) family. The aim of this study was to determine levels of expression of HSP60, HSP70, and HSP90 genes in Simmental cattle raised in tropical environments of Mexico.Methods: In this study, expression of HSP60, HSP70, and HSP90 genes was analyzed in 116 Simmental cattle from three farms with tropical climate located in western Mexico. Animals were sampled twice a day, in the morning and noon. Gene expression was evaluated by quantitative polymerase chain reaction using probes marked with fluorescence. The MIXED procedure of SAS with repeated measures was used for all statistical analysis.Results: HSP60 gene expression differences were found for sex (p = 0.0349). HSP70 gene differences were detected for sampling hour (p = 0.0042), farm (p<0.0001), sex (p = 0.0476), and the interaction sampling hour×farm (p = 0.0002). Gene expression differences for HSP90 were observed for farm (p<0.0001) and year (p = 0.0521). HSP70 gene showed to be a better marker of heat stress than HSP60 and HSP90 genes.Conclusion: Expression of HSP70 gene in Simmental herds of the tropical region of western México was different during early morning and noon, but the expression of the HSP60 and HSP90 genes was similar. Identification of resilient animals to heat stress will be useful in the genetic improvement of the Simmental breed.

Objective: The objective of this study was to perform genome (genome wide association studies [GWAS]) and chromosome (CWAS) wide association analyses to identify single nucleotide polymorphisms (SNPs) associated with growth traits in registered Simmental and Simbrah cattle.Methods: The phenotypes were deregressed BLUP EBVs for birth weight, weaning weight direct, weaning weight maternal, and yearling weight. The genotyping was performed with the GGP Bovine 150k chip. After the quality control analysis, 105,129 autosomal SNP from 967 animals (473 Simmental and 494 Simbrah) were used to carry out genotype association tests. The two association analyses were performed per breed and using combined information of the two breeds. The SNP associated with growth traits were mapped to their corresponding genes at 100 kb on either side.Results: A difference in magnitude of posterior probabilities was found across breeds between genome and chromosome wide association analyses. A total of 110, 143, and 302 SNP were associated with GWAS and CWAS for growth traits in the Simmental-, Simbrah-and joint -data analyses, respectively. It stands out from the enrichment analysis of the pathways for RNA polymerase (POLR2G, POLR3E) and GABAergic synapse (GABRR1, GABRR3) for Simmental cattle and p53 signaling pathway (BID, SERPINB5) for Simbrah cattle.Conclusion: Only 6,265% of the markers associated with growth traits were found using CWAS and GWAS. The associated markers using the CWAS analysis, which were not associated using the GWAS, represents information that due to the model and priors was not associated with the traits.

Objective: The aim was to characterize the genetic diversity evolution of the registered Mexican Charolais cattle population by pedigree analysis. Methods: Data consisted of 331,390 pedigree records of animals born from 1934 to 2018. Average complete generation equivalent, generation interval, effective population size (Ne), and effective numbers of founders (fe), ancestors (fa), and founder genomes (Ng) were calculated for seven five-year periods. The inbreeding coefficient was calculated per year of birth, from 1984 to 2018, whereas the gene contribution of the most influential ancestors was calculated for the latter period. Results: Average complete generation equivalent consistently increased across periods, from 4.76, for the first period (1984 through 1988), to 7.86, for the last period (2014 through 2018). The inbreeding coefficient showed a relative steadiness across the last seventeen years, oscillating from 0.0110 to 0.0145. During the last period, the average generation interval for the father-offspring pathways was nearly 1 yr. longer than that of the mother-offspring pathways. The effective population size increased steadily since 1984 (105.0) and until 2013 (237.1), but showed a minor decline from 2013 to 2018 (233.2). The population displayed an increase in the fa since 1984 and until 2008; however, showed a small decrease during the last decade. The effective number of founder genomes increased from 1984 to 2003, but revealed loss of genetic variability during the last fifteen years (from 136.4 to 127.7). The fa:fe ratio suggests that the genetic diversity loss was partially caused by formation of genetic bottlenecks in the pedigree; in addition, the Ng:fa ratio indicates loss of founder alleles due to genetic drift. The most influential ancestor explained 1.8% of the total genetic variability in the progeny born from 2014 to 2018. Conclusion: Inbreeding, Ne, fa, and Ng are rather beyond critical levels; therefore, the current genetic status of the population is not at risk.

Se estimaron parámetros genéticos para características de crecimiento en corderos Katahdin, usando seis variantes del modelo animal. Se usó información de pesos al nacimiento (BW; n= 13,099), al destete ajustado a 75 d (WW; n= 11,509) y posdestete ajustado a 120 d (AW; n= 6,886) tomada durante 7 años (2004-2010) en 20 estados de la República Mexicana. Los análisis se hicieron ignorando o incluyendo efectos maternos. El modelo más sencillo incluyó el efecto genético aditivo directo como el único efecto aleatorio. El modelo más completo incluyó los efectos genéticos directo y materno, la covarianza entre ellos, y el efecto del ambiente permanente materno. Para seleccionar el mejor modelo se usó la prueba de razón de verosimilitud. Cuando los efectos maternos no fueron incluidos en el modelo, los estimadores de la heredabilidad directa y de la varianza genética directa resultaron sobreestimados. Las heredabilidades directas con el mejor modelo fueron 0.18 ± 0.03, 0.30 ± 0.04 y 0.20 ± 0.05 para BW, WW y AW, respectivamente. Las heredabilidades maternas también variaron dependiendo del modelo, de 0.05 a 0.23, 0.00 a 0.12, y 0.09 a 0.25 para BW, WW y AW. El ignorar los efectos maternos en el modelo resultaría en una evaluación genética equivocada para las características de crecimiento en borregos Katahdin.

El objetivo fue presentar resultados de investigación sobre mejoramiento genético de bovinos productores de carne realizados por el Instituto Nacional de Investigaciones Forestales, Agrícolas y Pecuarias, así como los retos y perspectivas de investigación a corto, mediano y largo plazo en dicha área del conocimiento. Se utilizaron tesis de maestría, trabajos de congresos y artículos científicos publicados de 1987 a 2020. En los últimos 34 años, se logró caracterizar productiva y reproductivamente animales Bos indicus y Bos taurus x Bos indicus en condiciones tropicales, implementar evaluaciones genéticas multirraciales para las poblaciones Simmental-Simbrah y Charolais-Charbray, determinar la importancia de los efectos maternos en características de crecimiento y estimar la heredabilidad y correlaciones genéticas para características de crecimiento y reproductivas de machos y hembras en animales Bos taurus y Bos indicus, comprobar que la interacción genotipo-ambiente es un factor importante en la expresión de peso al destete en Simmental, desarrollar factores de ajuste de edad de la madre para pesos al nacimiento y destete, desarrollar un prototipo de evaluación genética nacional para permanencia productiva y otro para fertilidad de vaquillas, estimar la diversidad genética de las poblaciones Simmental, Charolais y Simbrah, e identificar SNP asociados a características de crecimiento en Simmental y Simbrah. En el corto plazo, se espera desarrollar índices de selección y predecir el mérito genético de características de canal; en el mediano, realizar evaluaciones genómicas para tolerancia al estrés calórico, consumo de alimento residual y características de salud; y a largo plazo, realizar predicciones genómicas a través de razas.