Guohua Shi

Prof. Dr. Guohua Shi


Research Focus & Metrics

Academic Career Length

18Years (2009-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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4 November 2019 in Biomedical Optics Express
Verified
Journal Article
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JWJing Wang
Jing Wang
GDGuohua Deng
Guohua Deng
WLWanyue Li
Wanyue Li
YCYiwei Chen
Yiwei Chen
FGFeng Gao
Feng Gao
GSGuohua Shi
Guohua Shi
Optical coherence tomography (OCT) is a promising high-speed, non-invasive imaging modality providing high-resolution retinal scans. However, a variety of external factors such as light occlusion and patient movement can seriously degrade OCT image quality, which complicates manual retinopathy detection and computer-aided diagnosis. As such, this study first presents an OCT image quality assessment (OCT-IQA) system, capable of automatic classification based on signal completeness, location, and effectiveness. Four CNN architectures (VGG-16, Inception-V3, ResNet-18, and ResNet-50) from the ImageNet classification task were used to train the proposed OCT-IQA system via transfer learning. The ResNet-50 with the best performance was then integrated into the final OCT-IQA network. The usefulness of this approach was evaluated using retinopathy detection results. A retinopathy classification network was first trained by fine-tuning Inception-V3 model. The model was then applied to two test datasets, created randomly from the original dataset, one of which was screened by the OCT-IQA system and only included high quality images while the other was mixed by high and low quality images. Results showed that retinopathy detection accuracy and area under curve (AUC) were 3.75% and 1.56% higher, respectively, for the filtered data (compared with the unfiltered data). These experimental results demonstrate the effectiveness of the proposed OCT-IQA system and suggest that deep learning could be applied to the design of computer-aided systems (CADSs) for automatic retinopathy detection.

1 January 2024 in Opto-Electronic Advances
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XXXin Xu
Xin Xu
QLQin Luo
Qin Luo
JWJixiang Wang
Jixiang Wang
YSYahui Song
Yahui Song
HYHong Ye
Hong Ye
GSGuohua Shi
Guohua Shi
Conventional microscopes designed for submicron resolution in biological research are hindered by a limited field of view, typically around 1 mm. This restriction poses a challenge when attempting to simultaneously analyze various parts of a sample, such as different brain areas. In addition, conventional objective lenses struggle to perform consistently across the required range of wavelengths for brain imaging in vivo. Here we present a novel mesoscopic objective lens with an impressive field of view of 8 mm, a numerical aperture of 0.5, and a working wavelength range from 400 to 1000 nm. We achieved a resolution of 0.74 μm in fluorescent beads imaging. The versatility of this lens was further demonstrated through high-quality images of mouse brain and kidney sections in a wide-field imaging system, a confocal laser scanning system, and a two-photon imaging system. This mesoscopic objective lens holds immense promise for advancing multi-wavelength imaging of large fields of view at high resolution.

7 July 2021 in Biomedical Optics Express
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Journal Article
Open access
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JWJing Wang
Jing Wang
WLWanyue Li
Wanyue Li
Yiwei ChenYiwei Chen
Yiwei Chen
WFWangyi Fang
Wangyi Fang
WKWen Kong
Wen Kong
GSGuohua Shi
Guohua Shi
Lesion detection is a critical component of disease diagnosis, but the manual segmentation of lesions in medical images is time-consuming and experience-demanding. These issues have recently been addressed through deep learning models. However, most of the existing algorithms were developed using supervised training, which requires time-intensive manual labeling and prevents the model from detecting unaware lesions. As such, this study proposes a weakly supervised learning network based on CycleGAN for lesions segmentation in full-width optical coherence tomography (OCT) images. The model was trained to reconstruct underlying normal anatomic structures from abnormal input images, then the lesions can be detected by calculating the difference between the input and output images. A customized network architecture and a multi-scale similarity perceptual reconstruction loss were used to extend the CycleGAN model to transfer between objects exhibiting shape deformations. The proposed technique was validated using an open-source retinal OCT image dataset. Image-level anomaly detection and pixel-level lesion detection results were assessed using area-under-curve (AUC) and the Dice similarity coefficient, producing results of 96.94% and 0.8239, respectively, higher than all comparative methods. The average test time required to generate a single full-width image was 0.039 s, which is shorter than that reported in recent studies. These results indicate that our model can accurately detect and segment retinopathy lesions in real-time, without the need for supervised labeling. And we hope this method will be helpful to accelerate the clinical diagnosis process and reduce the misdiagnosis rate.

3 May 2021 in Translational Vision Science & Technology
Verified
Journal Article
Open access
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WLWanyue Li
Wanyue Li
QCQian Chen
Qian Chen
CJChunhui Jiang
Chunhui Jiang
GSGuohua Shi
Guohua Shi
GDGuohua Deng
Guohua Deng
XSXinghuai Sun
Xinghuai Sun
Purpose: The purpose of this study was to develop a software package for the automatic classification of anterior chamber angle using anterior segment optical coherence tomography (AS-OCT). Methods: AS-OCT images were collected from subjects with open, narrow, and closure anterior chamber angles, which were graded based on ultrasound biomicroscopy (UBM) results. The Inception version 3 network and the transfer learning technique were applied in the design of an algorithm for anterior chamber angle classification. The classification performance was evaluated by fivefold cross-validation and on an independent test dataset. Results: The proposed algorithm reached a sensitivity of 0.999 and specificity of 1.000 in the judgment of closed and nonclosed angles. The overall classification of the proposed method in open angle, narrow angle, and angle-closure classifications reached a sensitivity of 0.989 and specificity of 0.995. Additionally, the sensitivity and specificity reached 1.000 and 1.000 for angle-closure, 0.983 and 0.993 for narrow angle, and 0.985 and 0.991 for open angle. Conclusions: The experimental results showed that the proposed method can achieve a high accuracy of anterior chamber angle classification using AS-OCT images, and could be of value in future practice. Translational Relevance: The proposed deep learning-based method that automate the classification of anterior chamber angle can facilitate clinical assessment of glaucoma.

10 June 2009 in Optics Letters
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Journal Article
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YZYudong Zhang
Yudong Zhang
XLXiqi Li
Xiqi Li
Wei LingWei Ling
Wei Ling
KWKai Wang
Kai Wang
Zhihua DingZhihua Ding
Zhihua Ding
GSGuohua Shi
Guohua Shi
The imaging speed and quality of a Fourier-domain optical-coherence-tomography (FD-OCT) technique is largely limited by the resampling process. A time-domain interpolation approach based on zero padding is proposed that gets a close fall-off but much-reduced imaging time in FD-OCT data processing as compared with the common zero-padding interpolation method. The experimental results obtained with an FD-OCT system using a 2048 pixel line scan camera showed that the fall-off was improved by ∼2 dB in deep z position and that the processing time was reduced to 468 ms per 400 axial scan lines with a Pentium Dual E2140 computer; that is, a more than 95% reduction compared with the conventional zero-padding approach.

1 December 2023 in Physics in Medicine & Biology
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Journal Article
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LWLingyun Wang
Lingyun Wang
SCSi Chen
Si Chen
LLLinbo Liu
Linbo Liu
XYXue Yin
Xue Yin
GSGuohua Shi
Guohua Shi
JMJianhua Mo
Jianhua Mo
Optical coherence tomography (OCT) is a fast and non-invasive optical interferometric imaging technique that can provide high-resolution cross-sectional images of biological tissues. OCT’s key strength is its depth resolving capability which remains invariant along the imaging depth and is determined by the axial resolution. The axial resolution is inversely proportional to the bandwidth of the OCT light source. Thus, the use of broadband light sources can effectively improve the axial resolution and however leads to an increased cost. In recent years, real-valued deep learning technique has been introduced to obtain super-resolution optical imaging. In this study, we proposed a complex-valued super-resolution network (CVSR-Net) to achieve an axial super-resolution for OCT by fully utilizing the amplitude and phase of OCT signal. The method was evaluated on three OCT datasets. The results show that the CVSR-Net outperforms its real-valued counterpart with a better depth resolving capability. Furthermore, comparisons were made between our network, six prevailing real-valued networks and their complex-valued counterparts. The results demonstrate that the complex-valued network exhibited a better super-resolution performance than its real-valued counterpart and our proposed CVSR-Net achieved the best performance. In addition, the CVSR-Net was tested on out-of-distribution domain datasets and its super-resolution performance was well maintained as compared to that on source domain datasets, indicating a good generalization capability.