Yuriy Knirel

Prof. Yuriy Knirel


Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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21 January 2016 in Viruses
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Journal Article
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AGAlla Golomidova
Alla Golomidova
EKEugene Eugenyevich Kulikov
Eugene Eugenyevich Kulikov
NPNikolai Prokhorov
Nikolai Prokhorov
RGRicardo Guerrero-Ferreira
Ricardo Guerrero-Ferreira
YKYuriy Knirel
Yuriy Knirel
ALAndrey Letarov
Andrey Letarov
The T5-like siphoviruses DT57C and DT571/2, isolated from horse feces, are very closely related to each other, and most of their structural proteins are also nearly identical to T5 phage. Their LTFs (L-shaped tail fibers), however, are composed of two proteins, LtfA and LtfB, instead of the single Ltf of bacteriophage T5. In silico and mutant analysis suggests a possible branched structure of DT57C and DT571/2 LTFs, where the LtfB protein is connected to the phage tail via the LtfA protein and with both proteins carrying receptor recognition domains. Such adhesin arrangement has not been previously recognized in siphoviruses. The LtfA proteins of our phages are found to recognize different host O-antigen types: E. coli O22-like for DT57C phage and E. coli O87 for DT571/2. LtfB proteins are identical in both phages and recognize another host receptor, most probably lipopolysaccharide (LPS) of E. coli O81 type. In these two bacteriophages, LTF function is essential to penetrate the shield of the host’s O-antigens. We also demonstrate that LTF-mediated adsorption becomes superfluous when the non-specific cell protection by O-antigen is missing, allowing the phages to bind directly to their common secondary receptor, the outer membrane protein BtuB. The LTF independent adsorption was also demonstrated on an O22-like host mutant missing O-antigen O-acetylation, thus showing the biological value of this O-antigen modification for cell protection against phages.

1 March 2015 in Journal of Bacteriology
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Journal Article
Open access
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YKYuriy Knirel
Yuriy Knirel
NPNikolai Prokhorov
Nikolai Prokhorov
ASAlexander S. Shashkov
Alexander S. Shashkov
OOOlga G. Ovchinnikova
Olga G. Ovchinnikova
EZEvelina L. Zdorovenko
Evelina L. Zdorovenko
ALAndrey Letarov
Andrey Letarov
The O polysaccharide of the lipopolysaccharide (O antigen) of Gram-negative bacteria often serves as a receptor for bacteriophages that can make the phage dependent on a given O-antigen type, thus supporting the concept of the adaptive significance of the O-antigen variability in bacteria. The O-antigen layer also modulates interactions of many bacteriophages with their hosts, limiting the access of the viruses to other cell surface receptors. Here we report variations of O-antigen synthesis and structure in an environmental Escherichia coli isolate, 4s, obtained from horse feces, and its mutants selected for resistance to bacteriophage G7C, isolated from the same fecal sample. The 4s O antigen was found to be serologically, structurally, and genetically related to the O antigen of E. coli O22, differing only in side-chain α- d -glucosylation in the former, mediated by a gtr locus on the chromosome. Spontaneous mutations of E. coli 4s occurring with an unusually high frequency affected either O-antigen synthesis or O-acetylation due to the inactivation of the gene encoding the putative glycosyltransferase WclH or the putative acetyltransferase WclK, respectively, by the insertion of IS 1 -like elements. These mutations induced resistance to bacteriophage G7C and also modified interactions of E. coli 4s with several other bacteriophages conferring either resistance or sensitivity to the host. These findings suggest that O-antigen synthesis and O-acetylation can both ensure the specific recognition of the O-antigen receptor following infection by some phages and provide protection of the host cells against attack by other phages.

19 March 2010 in Innate Immunity
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Journal Article
Closed access
YKYuriy Knirel
Yuriy Knirel
APAndrei V. Perepelov
Andrei V. Perepelov
AKAnna N. Kondakova
Anna N. Kondakova
SSSof'YA N. Senchenkova
Sof'YA N. Senchenkova
ZSZygmunt Sidorczyk
Zygmunt Sidorczyk
WKWiesław Kaca
Wiesław Kaca
This review is devoted to structural and serological characteristics of the O-antigens (O-polysaccharides) of the lipopolysaccharides of various Proteus species, which provide the basis for classifying Proteus strains to Oserogroups. The antigenic relationships of Proteus strains within and beyond the genus as well as their O-antigenrelated bioactivities are also discussed.

1 June 2014 in Carbohydrate Research
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Journal Article
Closed access
SSSof’ya N. Senchenkova
Sof’ya N. Senchenkova
ASAlexander S. Shashkov
Alexander S. Shashkov
MSMikhail M. Shneider
Mikhail M. Shneider
NANikolay P. Arbatsky
Nikolay P. Arbatsky
APAnastasiya V. Popova
Anastasiya V. Popova
YKYuriy Knirel
Yuriy Knirel

16 July 2015 in Biochemistry (Moscow)
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Journal Article
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YKYuriy Knirel
Yuriy Knirel
QSQiangzheng Sun
Qiangzheng Sun
SSS. N. Senchenkova
S. N. Senchenkova
APA. V. Perepelov
A. V. Perepelov
ASA. S. Shashkov
A. S. Shashkov
JXJianguo Xu
Jianguo Xu
O-Antigens (O-specific polysaccharides) of Shigella flexneri, a primary cause of shigellosis, are distinguished by a wide diversity of chemical modifications following the oligosaccharide O-unit assembly. The present review is devoted to structural, serological, and genetic aspects of these modifications, including O-acetylation and phosphorylation with phosphoethanolamine that have been identified recently. The modifications confer the host with specific immunodeterminants (O-factors or O-antigen epitopes), which accounts for the antigenic diversity of S. flexneri considered as a virulence factor of the pathogen. Totally, 30 O-antigen variants have been recognized in these bacteria, the corresponding O-factors characterized using specific antibodies, and a significant extension of the serotyping scheme of S. flexneri on this basis is suggested. Multiple genes responsible for the O-antigen modifications and the resultant serotype conversions of S. flexneri have been identified. The genetic mechanisms of the O-antigen diversification by acquisition of mobile genetic elements, including prophages and plasmids, followed occasionally by gene mobilization and inactivation have been revealed. These findings further our understanding of the genetics and antigenicity of S. flexneri and assist control of shigellosis.

1 April 2015 in Carbohydrate Research
Verified
Journal Article
Closed access
SSSof'YA N. Senchenkova
Sof'YA N. Senchenkova
APAnastasiya V. Popova
Anastasiya V. Popova
ASAlexander S. Shashkov
Alexander S. Shashkov
MSMikhail M. Shneider
Mikhail M. Shneider
ZMZhu Mei
Zhu Mei
YKYuriy Knirel
Yuriy Knirel