The synthesis and characterization of two new Schiff base ligands containing 1,2,4-triazole moieties and their oxovanadium(IV) complexes have been reported. The ligands and their complexes were studied by ultraviolet–visible (UV–Vis), Fourier transform infrared (FTIR), proton nuclear magnetic resonance (¹H NMR), electron paramagnetic resonance (EPR), X-ray diffraction (XRD), conductivity measurement, cyclic voltammetry (CV), and elemental analyses. The molar conductance of oxovanadium(IV) complexes were found to be relatively low, depicting their non-electrolytic nature. The XRD patterns reveal the size of particles to be 47.53 nm and 26.28 nm for the two complexes in the monoclinic crystal system. The molecular structures, geometrical parameters, chemical reactivity, stability, and frontier molecular orbital pictures were determined by density functional theory (DFT) calculations. The theoretical vibrational frequencies and EPR g-factors (1.98) were found to correlate well with the experimental values. A distorted square pyramidal geometry with C₂ symmetry of the complexes has been proposed from experimental and theoretical results in a synergistic manner. The antimicrobial sensitivity of the ligands and their metal complexes assayed in vitro against four bacterial pathogens viz. Staphylococcus aureus, Escherichia coli, Pseudomonas aeruginosa, and Salmonella Typhi showed that the oxovanadium(IV) complexes are slightly stronger antibacterial agents than their corresponding Schiff base precursors. The binding affinities obtained from the molecular docking calculations with the receptor proteins of bacterial strains (2EUG, 3UWZ, 4GVF, and 4JVD) showed that the Schiff bases and their oxovanadium(IV) complexes have considerable capacity inferring activeness for effective inhibition. The molecular dynamics simulation of a protein-ligand (4JVD-HL₂) complex with the best binding affinity of −12.8 kcal/mol for 100 ns showed acceptable stability of the docked pose and binding free energy of −15.17 ± 2.29 kcal/mol from molecular mechanics-generalized Born surface area (MM-GBSA) calculations indicated spontaneity of the reaction. The outcome of the research shows the complementary role of computational methods in material characterization and provides an interesting avenue to pursue for exploring new triazole based Schiff's bases and its vanadium compounds for better properties.

Dengue poses a persistent and widespread threat with no effective antiviral drug available till now. Several inhibitors have been developed by targeting the viral non-structural proteins including methyl transferase (NS5) of the dengue virus with possible therapeutic values. In this work, virtual screening, molecular docking, molecular dynamics simulations (200 ns), and assessments of free energy changes have been carried out to identify potential candidates from a database of flavonoids (ca. 2000) that may have good curative potential from the disease. The binding affinity of flavonoids, namely Genistein-7-glucoside (FLD1), 6’–O-Acetylgenistin (FLD2), 5,6-dihydroxy-2-(4-hydroxyphenyl)-7-[3,4,5-trihydroxy-6-(hydroxymethyl)oxane-2-yl]oxychromen-4-one (FLD3), Glucoliquiritigenin (FLD4), and Chrysin-7-O-glucoronide (FLD5) showed the binding affinities of −10.2, −10.2, −10.1, −10.1, −9.9 kcal/mol, respectively, and possessed better values than that of the native ligand (−7.6 kcal/mol) and diclofenac sodium (−7.3 kcal/mol). Drug-likeness of the top five flavonoids were acceptable and no end-point toxicity was hinted by ADMET predictions. The stability of the protein-ligand complexes was accessed from 200 ns molecular dynamics simulations in terms of various geometrical parameters; RMSD, RMSF of residues, Rg, SASA, H-bond, and RPDF. The binding free energy changes of these adducts were calculated by the MM/PBSA solvation model with negative values (from −38.01±7.53 to −17.75±11.03 kcal/mol) indicating the sustained spontaneity of the forward reaction and favorability of the product formation. The geometrical and thermodynamic parameters inferred that the flavonoids could bind at the orthosteric site of the target protein of DENV-2 and could inhibit its functioning, possibly, resulting in the prevention of the disease. Overall, this study highlights the anti-DENV activity of five flavonoids, positioning them as promising candidates for further development as antiviral agents against dengue infection.

The global economic burden of malaria is rising and lack of effective drugs against it have imposed an insurmountable challenge in designing it that is both affordable and resistanceless. The plants with ethnobotanical values are relatively safer and its use is a viable option as therapeutics for various demographic locations. In this regard, the chemical components of a plant, Swertia chirayita Roxb. ex Fleming (traditionally used as an antimalarial agent) were explored by multiple computational tools against dihydroorotate dehydrogenase (DHODH) protein of Plasmodium falciparum (PDB ID: 6GJG), a causative agent of the disease. The docking scores were calculated to be − 10.220, − 10.131, − 10.071, − 10.024, and − 9.905 kcal/mol for the top five molecules (decussatin, swerchirin, 1-hydroxy-3,5,8-trimethoxyxanthen-9- one, swertinin, and chiratol), respectively with the native ligand possessing a higher value of − 9.873 kcal/mol. The adducts were geometrically and thermodynamically stable as revealed by several parameters extracted from 200 ns molecular dynamics simulations (MDS) and verified by a single run of 600 ns. The smooth RMSD profiles from a cumulative MDS of 2.0 μs, pointed towards a sturdy nature of the receptor geometry with limited translational or rotational motion of the ligands. The involvement of LEU11, CYS14, LEU15, CYS23, PHE27, ILE102, ARG104, TYR337, LEU340, and VAL341 amino acid residues with mainly hydrophobic interactions at the orthosteric site were observed for most of the adducts. The binding free energy changes (up to − 30.18 ± 4.38 kcal/mol) hinted at the feasibility and sustained thermodynamical spontaneity of the forward reaction of the complex formation. The hit molecules could possibly disrupt or inhibit the normal functioning of the DHODH receptor leading to the likely prevention and cure of the disease and are recommended for experimental trials.

Iridoids commonly found in plants as secondary metabolites have been reported to possess significant biological activities such as anticancer, antioxidant, hypoglycemic, antimicrobial etc. The strong interactions of iridoids with cyclic-dependent kinase 8 (CDK8) protein could show inhibitory effects that could modulate tumour growth. From the molecular docking calculations, some iridoids interacted effectively with the target CDK8 protein (PDB ID: 5ICP) with better binding affinities of -9.1, -9.0, -9.0, -8.9 kcal/mol, than that observed for the native ligand with -8.7 kcal/mol and for the reference compound gemcitabine with -6.9 kcal/mol. The GI₅₀ values (<5 μM) obtained from graph-based signatures showed activity in breast, colon, leukaemia, and renal cancer cell lines. The IC₅₀ predictions as CDK2 inhibitors were greater than 10 µM with type I non-allosteric binding mode. The stability analysis of protein-ligand complex from 125 ns long molecular dynamics simulations showed moderately smooth trajectories and RSMD value around 5 Å for the docked ligands. The binding free energy changes up to -47.65 ± 5.97 kcal/mol from MMGBSA method and -30.33 ± 5.40 kcal/mol from MMPBSA method hinted at the spontaneous nature of the complex formation. Furthermore, geometrical evaluators like RMSF, R_g, SASA, and hydrogen bond count also corroborated with the structural stability of the complexes and the capacity of hit molecules to inhibit the target, indicating its therapeutic potential against cancer. The toxicity and drug-likeness from ADMET predictions suggested experimental verification and that the proposed candidates could be employed for further trials in the development of safer and more effective anticancer drugs.Communicated by Ramaswamy H. Sarma.