The quality of milk is tightly linked to its brand. A famous brand of milk always has good quality. Therefore, this study seeks to design a new fuzzy feature extraction method, called fuzzy improved null linear discriminant analysis (FiNLDA), to cluster the spectra of collected milk for identifying milk brands. To elevate the classification accuracy, FiNLDA was applied to process the near-infrared (NIR) spectra of milk acquired by the portable near-infrared spectrometer. The principal component analysis and Savitzky–Golay (SG) filtering algorithm were employed to lower dimensionality and eliminate noise in this system, respectively. Thereafter, improved null linear discriminant analysis (iNLDA) and FiNLDA were applied to attain the discriminant information of the NIR spectra. At last, the K-nearest neighbor classifier was utilized for assessing the performance of the identification system. The results indicated that the maximum classification accuracies of LDA, iNLDA and FiNLDA were 74.7%, 88% and 94.67%, respectively. Accordingly, the portable NIR spectrometer in combination with FiNLDA can classify milk brands correctly and effectively.