Tobias K Karakach

Dr. Tobias K Karakach

orcid

Research Focus & Metrics

Academic Career Length

22Years (2005-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 February 2020 in Cell
Verified
Journal Article
Closed access
JKJoanna Kalucka
Joanna Kalucka
LRLaura P.M.H. de Rooij
Laura P.M.H. de Rooij
JGJermaine Goveia
Jermaine Goveia
KRKaterina Rohlenova
Katerina Rohlenova
SDSébastien J. Dumas
Sébastien J. Dumas
PCPeter Carmeliet
Peter Carmeliet

1 January 2020 in Cancer Cell
Verified
Journal Article
Closed access
JGJermaine Goveia
Jermaine Goveia
KRKaterina Rohlenova
Katerina Rohlenova
FTFederico Taverna
Federico Taverna
TLTREPS Lucas
TREPS Lucas
LCLena-Christin Conradi
Lena-Christin Conradi
PCPeter Carmeliet
Peter Carmeliet

1 April 2020 in Cell Metabolism
Verified
Journal Article
Closed access
KRKaterina Rohlenova
Katerina Rohlenova
JGJermaine Goveia
Jermaine Goveia
Melissa García CaballeroMelissa García Caballero
Melissa García Caballero
ASAbhishek Subramanian
Abhishek Subramanian
JKJoanna Kalucka
Joanna Kalucka
PCPeter Carmeliet
Peter Carmeliet

9 December 2019 in Journal of the American Society of Nephrology
Verified
Journal Article
Closed access
SDSébastien J. Dumas
Sébastien J. Dumas
EMElda Meta
Elda Meta
MBMila Borri
Mila Borri
JGJermaine Goveia
Jermaine Goveia
KRKaterina Rohlenova
Katerina Rohlenova
PCPeter Carmeliet
Peter Carmeliet
Significance Statement: The specialized vessels comprising the renal vasculature are characterized by highly differentiated renal endothelial cell types, but this heterogeneity has been poorly inventoried. Using single-cell RNA sequencing, the authors developed a high-resolution atlas of mouse renal endothelial cells. They also investigated how medullary renal endothelial cells adapt to a switch from diuresis to antidiuresis. This study describes the molecular and metabolic adaptation of medullary renal endothelial cells to dehydration, and uncovers a role for mitochondrial oxidative phosphorylation in hyperosmolarity conditions to allow for urine concentration. The authors’ atlas of mouse renal endothelial cells provides a resource for future studies, and their findings may provide insights into cardiometabolic or kidney diseases involving hyperosmolarity and dehydration, in which urine concentration capacity is perturbed. Background: Renal endothelial cells from glomerular, cortical, and medullary kidney compartments are exposed to different microenvironmental conditions and support specific kidney processes. However, the heterogeneous phenotypes of these cells remain incompletely inventoried. Osmotic homeostasis is vitally important for regulating cell volume and function, and in mammals, osmotic equilibrium is regulated through the countercurrent system in the renal medulla, where water exchange through endothelium occurs against an osmotic pressure gradient. Dehydration exposes medullary renal endothelial cells to extreme hyperosmolarity, and how these cells adapt to and survive in this hypertonic milieu is unknown. Methods: We inventoried renal endothelial cell heterogeneity by single-cell RNA sequencing >40,000 mouse renal endothelial cells, and studied transcriptome changes during osmotic adaptation upon water deprivation. We validated our findings by immunostaining and functionally by targeting oxidative phosphorylation in a hyperosmolarity model in vitro and in dehydrated mice in vivo. Results: We identified 24 renal endothelial cell phenotypes (of which eight were novel), highlighting extensive heterogeneity of these cells between and within the cortex, glomeruli, and medulla. In response to dehydration and hypertonicity, medullary renal endothelial cells upregulated the expression of genes involved in the hypoxia response, glycolysis, and—surprisingly—oxidative phosphorylation. Endothelial cells increased oxygen consumption when exposed to hyperosmolarity, whereas blocking oxidative phosphorylation compromised endothelial cell viability during hyperosmotic stress and impaired urine concentration during dehydration. Conclusions: This study provides a high-resolution atlas of the renal endothelium and highlights extensive renal endothelial cell phenotypic heterogeneity, as well as a previously unrecognized role of oxidative phosphorylation in the metabolic adaptation of medullary renal endothelial cells to water deprivation.

25 November 2008 in Environmental Science & Technology
Verified
Journal Article
Closed access
MVMark Viant
Mark Viant
DBDaniel W. Bearden
Daniel W. Bearden
JBJacob G. Bundy
Jacob G. Bundy
IBIan W. Burton
Ian W. Burton
TCTimothy W. Collette
Timothy W. Collette
HWHuifeng Wu
Huifeng Wu

1 January 2005 in Developmental & Comparative Immunology
Verified
Journal Article
Closed access
KEK. Vanya Ewart
K. Vanya Ewart
JBJasmine C. Belanger
Jasmine C. Belanger
JWJason Williams
Jason Williams
TKTobias K Karakach
Tobias K Karakach
SPSusanne Penny
Susanne Penny
SDSusan E. Douglas
Susan E. Douglas