Artem Badasyan

Prof. Dr. Artem Badasyan

Materials Research Laboratory, University of Nova Gorica, Vipavska 13, SI-5000 Nova Gorica, Slovenia
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Research Focus & Metrics

Academic Career Length

23Years (2004-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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23 February 2010 in Physical Review E
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Journal Article
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Artem BadasyanArtem Badasyan
Artem Badasyan
AGAchille Giacometti
Achille Giacometti
YMY. Sh. Mamasakhlisov
Y. Sh. Mamasakhlisov
VMV. F. Morozov
V. F. Morozov
ABAlbert Benight
Albert Benight
A microscopic spin model is proposed for the phenomenological Zimm-Bragg model for the helix-coil transition in biopolymers. This model is shown to provide the same thermophysical properties of the original Zimm-Bragg model and it allows a very convenient framework to compute statistical quantities. Physical origins of this spin model are made transparent by an exact mapping into a one-dimensional Ising model with an external field. However, the dependence on temperature of the reduced external field turns out to differ from the standard one-dimensional Ising model and hence it gives rise to different thermophysical properties, despite the exact mapping connecting them. We discuss how this point has been frequently overlooked in the recent literature.

1 December 2008 in Journal of Molecular Biology
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Artem BadasyanArtem Badasyan
Artem Badasyan
ZLZhirong Liu
Zhirong Liu
HCHue Sun Chan
Hue Sun Chan

1 April 2018 in Materials Research Bulletin
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JPJasnamol Pezhumkattil Palakkal
Jasnamol Pezhumkattil Palakkal
CSCheriyedath Raj Sankar
Cheriyedath Raj Sankar
APAjeesh Parayancheri Paulose
Ajeesh Parayancheri Paulose
MVMatjaz Valant
Matjaz Valant
Artem BadasyanArtem Badasyan
Artem Badasyan
MVManoj Raama Varma
Manoj Raama Varma

4 October 2004 in Biopolymers
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VMVladimir F. Morozov
Vladimir F. Morozov
Artem BadasyanArtem Badasyan
Artem Badasyan
AGArsen V. Grigoryan
Arsen V. Grigoryan
MSMihran A. Sahakyan
Mihran A. Sahakyan
YMYevgeni Sh Mamasakhlisov
Yevgeni Sh Mamasakhlisov

21 April 2016 in Soft Matter
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TSTatjana Skrbic
Tatjana Skrbic
Artem BadasyanArtem Badasyan
Artem Badasyan
THTrinh Xuan Hoang
Trinh Xuan Hoang
Rudolf PodgornikRudolf Podgornik
Rudolf Podgornik
AGAchille Giacometti
Achille Giacometti
We use a micro-canonical Wang–Landau technique to study the equilibrium properties of a single flexible homopolymer where consecutive monomers are represented by impenetrable hard spherical beads tangential to each other, and non-consecutive monomers interact via a square-well potential. To mimic the characteristics of a protein-like system, the model is then refined in two different directions. Firstly, by allowing partial overlap between consecutive beads, we break the spherical symmetry and thus provide a severe constraint on the possible conformations of the chain. Alternatively, we introduce additional spherical beads at specific positions in the direction normal to the backbone, to represent the steric hindrance of the side chains in real proteins. Finally, we consider also a combination of these two ingredients. In all three systems, we obtain the full phase diagram in the temperature-interaction range plane and find the presence of helicoidal structures at low temperatures in the intermediate range of interactions. The effect of the range of the square-well attraction is highlighted, and shown to play a role similar to that found in simple liquids and polymers. Perspectives in terms of protein folding are finally discussed.

7 August 2012 in Physical Review Letters
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Journal Article
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Artem BadasyanArtem Badasyan
Artem Badasyan
STShushanik Tonoyan
Shushanik Tonoyan
AGAchille Giacometti
Achille Giacometti
RPRudolf Podgornik
Rudolf Podgornik
VPV. Adrian Parsegian
V. Adrian Parsegian
VMVladimir Morozov
Vladimir Morozov
Most helix-coil transition theories can be characterized by three parameters: energetic, describing the (free) energy cost of forming a helical state in one repeating unit; entropic, accounting for the decrease of entropy due to formation of the helical state; and geometric, indicating how many repeating units are affected by the formation of one helical state. Depending on their effect on the helix-coil transition, solvents or cosolutes can be classified with respect to their action on these parameters. Solvent interactions that alter the entropic cost of helix formation by their osmotic action can affect both the stability (transition temperature) and the cooperativity (transition interval) of the helix-coil transition. Consistent inclusion of osmotic pressure effects in a description of helix-coil transition, for poly(L-glutamic acid) in solution with polyethylene glycol, can offer an explanation of the experimentally observed linear dependence of transition temperature on osmotic pressure as well as the concurrent changes in the cooperativity of the transition.