Endophytes represent a ubiquitous and magical world in plants. Almost all plant species studied by different researchers have been found to harbor one or more endophytes, which protect host plants from pathogen invasion and from adverse environmental conditions. They produce various metabolites that can directly inhibit the growth of pathogens and even promote the growth and development of the host plants. In this review, we focus on the biological control of plant diseases, aiming to elucidate the contribution and key roles of endophytes and their metabolites in this field with the latest research information. Metabolites synthesized by endophytes are part of plant disease management, and the application of endophyte metabolites to induce plant resistance is very promising. Furthermore, multi-omics should be more fully utilized in plant–microbe research, especially in mining novel bioactive metabolites. We believe that the utilization of endophytes and their metabolites for plant disease management is a meaningful and promising research direction that can lead to new breakthroughs in the development of more effective and ecosystem-friendly insecticides and fungicides in modern agriculture.

Anthracnose, caused by the fungus Collectotrichum fructicola (C. fructicola), is a major disease affecting the quality and yield of Camellia oleifera (C. oleifera); it reduces C. oleifera yield by 40%–80%. Bacillus subtilis (B. subtilis) YL13 is an antagonistic endophytic bacteria strain isolated from healthy C. oleifera leaves. This study was aimed at investigating the potential of YL13 for the biocontrol of C. oleifera anthracnose and the possible mechanisms involved. In in vitro assays, YL13 demonstrated remarkable antagonistic activity of C. fructicola. Its cell-free filtrates displayed antagonistic activity, which suggested that the metabolites of YL13 might play important roles. In vivo tests showed that the disease index of YL13-treated plants was obviously reduced under greenhouse conditions. YL13 secretes a variety of bioactive metabolites, including protease, cellulase, and siderophore, which might participate in the resistance to C. fructicola. In addition, C. oleifera treated with the fermentation broth of YL13 demonstrated different defense responses, e.g., accumulation of hydrogen peroxide (H₂O₂) and activation of the defense-related enzyme peroxidase (POD), which might contribute directly or indirectly to overcome external stresses. The significant biocontrol effect and host defense-induction activity of YL13 suggested that this B. subtilis strain as well as its metabolites have the potential to be exploited as microbial control agents for the efficient management of C. oleifera anthracnose.

Agarwood is a precious resinous heartwood highly valued for its cultural, religious, and medicinal significance. With the increasing market demand, natural agarwood resources are rapidly depleting, making the development of effective artificial induction methods for agarwood highly significant. This study aims to explore the feasibility of using callus tissue to assess the ability of fungi to induce agarwood formation. We selected two fungi isolated from Aquilaria sinensis, W-1 (Podospora setosa) and W-15 (Alternaria alstroemeriae), and used the known agarwood-inducing fungi YMY (Pestalotiopsis sp.) as a positive control, by treating A. sinensis callus with their fermented filtrates. The experimental results showed that W-1 and W-15 treatments significantly enhanced the activity of Superoxide dismutase (SOD) and Peroxidase (POD) in the callus tissue and upregulated the expression of 3-hydroxy-3-methylglutaryl-CoA synthase (HMGS), 1-deoxy-D-xylulose-5-phosphate reductoisomerase (DXR), and sesquiterpene synthase (ASS-1). GC-MS analysis further confirmed that the contents of sesquiterpenes and aromatic compounds in A. sinensis treated with W-1 and W-15 were significantly elevated, suggesting that these fungi possess the capacity to induce the formation of agarwood. This study demonstrates that using callus tissue to screen fungi capable of inducing agarwood is feasible and effective, providing new insights for screening fungi resources that efficiently induce agarwood formation in the future.