The high-intensity partial pressure of CO₂ (pCO₂) in karst underground rivers rapidly releases in open-flow sections. This is an important process affecting the global karst carbon cycle. This study focuses on the diurnal variation patterns and driving factors of CO₂ exchange flux at the water–air interface in the open-flow sections of typical karst underground rivers in southwestern China. The inorganic carbon in water and water–air interface exchange fluxes are observed. Three representative survey stations, i.e., the outlet of the underground river (Q1), the river sections without submerged plants (H1), and the river sections with submerged plants (H2), are selected to study the CO₂ exchange process and its influencing factors. The results show that the CO₂ release flux at Q1 exhibits high pressure in the daytime and low pressure in the nighttime, while H1 and H2 exhibit the opposite pattern. The photosynthesis of submerged plants significantly inhibits the carbon release flux of the river, and in the river sections where submerged plants are distributed, their biological effects have inhibited approximately 0.131 Tg C/yr of carbon emissions. This study emphasizes the significant contribution of submerged plants in restraining the release of CO₂, thereby promoting carbon sequestration and storage in karst water systems.

The high-intensity pCO₂ in karst underground river water is rapidly released or absorbed by aquatic organisms in open flow sections and is an important factor affecting the karst carbon cycle. This article takes a typical karst underground river basin in southwestern China as the research object. By observing the water carbon and water‒air interface exchange fluxes at the outlet of the underground river (Q1), the river section without submerged plants (H1), and the river section with submerged plants (H2), the diurnal variation pattern and driving factors of CO₂ flux at the water‒air interface in the karst area were evaluated, and the transformation process of water carbon and the source sink changes in water carbon in the open-flow section were explored. The results show that CO₂ flux and pCO₂ in the study area exhibit significant spatial differences, with the outlet of the underground river having the highest values. DO is found to be a key controlling factor affecting changes in CO₂ flux. The metabolism of submerged plants has a regulatory role on the change in CO₂ flux, forming a carbon sink in the river section with submerged plants. Therefore, this study helps to understand the diurnal variation in carbon exchange fluxes at the water‒air interface in the open flow section of karst underground rivers and emphasizes the variation pattern of CO₂ fluxes from source to sink in the open flow section, providing an effective way to promote carbon sequestration and sink enhancement in karst water bodies.