The use of biological methods to control plant diseases has garnered attention due to their eco-friendly and economically viable nature. Trichoderma spp. are the most ubiquitous fungal saprophytes that can often grow as opportunistic symbionts, are eco-friendly, and are not reported to exert any environmental hazard. Soil-borne pathogens can significantly impact the yield of chilli and tomato crops. The study was conducted to explore the impact of various salts (NaCl, MgCl₂, CaCl₂, and KCl) and their concentrations (1%, 5%, 10%, and 15%) on the mycelial growth and sporulation of Trichoderma viride followed by its mass multiplication on diverse organic substrates like wheat seeds, wheat husks, mungbean seeds, maize seeds, rice seeds, pea seeds, sorghum seeds, banana peel, apple peel, pomegranate peel, citrus peel, tomato waste, chilli waste, spinach waste, cabbage waste, potato peel, onion peel, cucumber peel, carrot peel, used black tea leaves, used green tea leaves, poultry waste, and cow and goat dung. The study assessed the biocontrol potential of Trichoderma viride against important soil-borne pathogens in chilli (Pythium aphanidermatum, Phytophthora capsici, and Fusarium oxysporum) and tomato (Pythium aphanidermatum, Phytophthora infestans, and F. oxysporum) cropping in the pot and field experiments using saline and alkaline soils. Seed treatment with T. viride significantly enhanced the germination rates of both chilli and tomato crops, with sorghum being the most conducive substrate for mass-multiplying T. viride. The results revealed that lower salt concentrations minimally affected T. viride growth, while higher concentrations hampered both growth and sporulation. Optimal disease control and plant height were observed at a 20 mg concentration of T. viride, consequently applied in vivo using various application methods, i.e., seed treatment, root dip, irrigation, and mixed treatments (all the methods like seed treatment, root dip method, and irrigation method applied together) to manage soil-borne pathogens. Particularly, T. viride application through irrigation and mixed treatments demonstrated strong efficacy. These findings underscore the potential of T. viride application in saline and alkaline soils to manage soil-borne pathogens like Pythium, Phytophthora spp., and Fusarium spp. This study lays the foundation for the practical application of biocontrol agents, like T. viride, in Pakistani agricultural conditions. Moreover, there is a need for further exploration into the genetic mechanisms involved in disease inhibition and plant growth promotion, along with understanding the impact of T. viride on the metabolic pathways of host plants.

Nanoclay, a processed clay, is utilized in numerous high-performance cement nanocomposites. This clay consists of minerals such as kaolinite, illite, chlorite, and smectite, which are the primary components of raw clay materials formed in the presence of water. In addition to silica, alumina, and water, it also contains various concentrations of inorganic ions like Mg²⁺, Na⁺, and Ca²⁺. These are categorized as hydrous phyllosilicates and can be located either in interlayer spaces or on the planetary surface. Clay minerals are distinguished by their two-dimensional sheets and tetrahedral (SiO₄) and octahedral (Al₂O₃) crystal structures. Different clay minerals are classified based on the presence of tetrahedral and octahedral layers in their structure. These include kaolinite, which has a 1:1 ratio of tetrahedral to octahedral layers, the smectite group of clay minerals and chlorite with a 2:1 ratio. Clay minerals are unique due to their small size, distinct crystal structure, and properties such as high cation exchange capacity, adsorption capacity, specific surface area, and swelling behavior. These characteristics are discussed in this review. The use of nanoclays as nanocarriers for fertilizers boasts a diverse array of materials available in both anionic and cationic variations. Layered double hydroxides (LDH) possess a distinctive capacity for exchanging anions, making them suitable for facilitating the transport of borate, phosphate, and nitrate ions. Liquid nanoclays are used extensively in agriculture, specifically as fertilizers, insecticides, herbicides, and nutrients. These novel nanomaterials have numerous benefits, including improved nutrient use, controlled nutrient release, targeted nutrient delivery, and increased agricultural productivity. Arid regions face distinct challenges like limited water availability, poor soil quality, and reduced productivity. The addition of liquid nanoclay to sandy soil offers a range of benefits that contribute to improved soil quality and environmental sustainability. Liquid nanoclay is being proposed for water management in arid regions, which will necessitate a detailed examination of soil, water availability, and hydrological conditions. Small-scale trial initiatives, engagement with local governments, and regular monitoring are required to fully comprehend its benefits and drawbacks. These developments would increase the practicality and effectiveness of using liquid nanoclay in desert agriculture.

Zucchini yellow mosaic virus (ZYMV) is a severe threat to cucurbit crops worldwide, including Pakistan. This study was pursued to evaluate the prevalence, geographic distribution, and molecular diversity of ZYMV isolates infecting cucurbits in Pakistan’s Pothwar region. Almost all the plant viruses act as a biotic stress on the host plants, which results in a yield loss. These viruses cause losses in single-infection or in mixed-infection cucurbit crops, and we have found a number of mixed-infected samples belonging to the Curubitaceae family. Serological detection of the tested potyviruses in the collected cucurbit samples revealed that ZYMV was the most prevalent virus, with a disease incidence (DI) at 35.2%, followed by Papaya ringspot virus (PRSV) with an incidence of 2.2%, and Watermelon mosaic virus (WMV) having an incidence as little as 0.5% in 2016. In the year 2017, a relatively higher disease incidence of 39.7%, 2.4%, and 0.3% for ZYMV, WMV, and PRSV, respectively, was recorded. ZYMV was the most prevalent virus with the highest incidence in Attock, Rawalpindi, and Islamabad, while PRSV was observed to be the highest in Islamabad and Jhelum. WMV infection was observed only in Rawalpindi and Chakwal. Newly detected Pakistani ZYMV isolates shared 95.8–97.0% nucleotide identities among themselves and 77.1–97.8% with other isolates retrieved from GenBank. Phylogenetic relationships obtained using different ZYMV isolates retrieved from GenBank and validated by in silico restriction analysis revealed that four Pakistani isolates clustered with other ZYMV isolates in group IIb with Chinese, Italian, Polish, and French isolates, while another isolate (MK848239) formed a separate minor clade within IIb. The isolate MK8482490, reported to infect bitter gourd in Pakistan, shared a minor clade with a Chinese isolate (KX884570). Recombination analysis revealed that the recently found ZYMV isolate (MK848239) is most likely a recombinant of Pakistani (MK848237) and Italian (MK956829) isolates, with a recombinant breakpoint between 266 and 814 nucleotide positions. Local isolate comparison and recombination detection may aid in the development of a breeding program that identifies resistant sources against recombinant isolates because the ZYMV is prevalent in a few cucurbit species grown in the surveyed areas and causes heavy losses and economic damage to the agricultural community.

The global population is rising at an alarming rate and is projected to reach 10 billion by 2050, necessitating a substantial increase in food production. However, the overuse of chemical pesticides, including antibacterial agents and synthetic fertilizers, poses a major threat to sustainable agriculture. This review examines the ecological and health impacts of antibacterial agents (e.g., streptomycin, oxytetracycline, etc.) in horticultural crops, focusing on their effects on non-target organisms such as beneficial microbes involved in plant growth promotion and resistance development. Certain agents (e.g., triclosan, sulfonamides, and fluoroquinolones) leach into water systems, degrading water quality, while others leave toxic residues in crops, leading to human health risks like dysbiosis and antibiotic resistance. To mitigate these hazards, sustainable alternatives such as integrated plant disease management (IPDM) and biotechnological solutions are essential. Advances in genetic engineering including resistance-conferring genes like EFR1/EFR2 (Arabidopsis), Bs2 (pepper), and Pto (tomato) help combat pathogens such as Ralstonia solanacearum and Xanthomonas campestris. Additionally, CRISPR-Cas9 enables precise genome editing to enhance inherent disease resistance in crops. Emerging strategies like biological control, plant-growth-promoting rhizobacteria (PGPRs), and nanotechnology further reduce dependency on chemical antibacterial agents. This review highlights the urgent need for sustainable disease management to safeguard ecosystem and human health while ensuring food security.

Cotton is a cash crop of many countries as it serves as a source of fiber, edible oil, and seedcake. It is grown in a diverse range of environment. Bacillus thuringiensis (Bt) is a gram positive bacterium found in different habitats but mostly found in soil. This bacterium produces endotoxin which is harmful for various insects. Numerous crystal-forming strains of Bt exist in nature, but not all of them are efficient against insect pests. Bt cotton is prevalent internationally because of less insect attack. The key objective of this research was to analyze different Bacillus thuringiensis isolates residing in soil of different cotton fields of Multan and Bahawalpur districts and to identify them on the basis of morphology. To attain this, different soil samples were collected from Multan (Gup wala, Mosey Wala, Taloki Wala, Hafiz Wala, Choudary Wala, Basti Mangla Mari, Sharkha Wala, Lawain Wala, Ghulamo Wala) and Bahawalpur district (Basti Deewan Wali, Check No 8, Basti Tariqabad, Basti Khaji Wala, Basti Khandin, Basti Rammo Wali, Sultanpur, Khurampur, Jahanpur). About 178 colonies of different bacteria from eighteen soil samples appeared on Nutrient Agar plates. The screening of colonies based on morphology yielded 18 colonies of Bt. We performed endo-toxin production experiment and confirmed the presence of parasporal crystals in identified B. thuringiensis colonies. Colony forming units of soil samples collected from Multan and Bahawalpur represented statistically significant results. Based on morphology, eight colonies of B. thuringiensis were confirmed out of eighteen colonies. Results of the current study revealed that out of 18 isolates, 8 bacterial isolates that were grown on the media had an increased elevation, a round, white, slimy morphology, and smooth edges. Toxicity test for resistance to cotton leaf worm second instar larvae revealed that two strains (BtS2, BtS7) of B. thuringiensis were toxic and showed 39.25% mortality. This study will help to identify the local Bt isolates that can be used for the indigenous insect pest control.