High-resolution infrared remote sensing imaging is critical in planetary exploration, especially under demanding engineering conditions. However, due to diffraction, the spatial resolution of conventional methods is relatively low, and the spatial bandwidth product limits imaging systems’ design. Extensive research has been conducted with the aim of enhancing spatial resolution in remote sensing using a multi-aperture structure, but obtaining high-precision co-phase results using a sub-aperture remains challenging. A new high-resolution imaging method utilizing multi-aperture joint-encoding Fourier ptychography (JEFP) is proposed as a practical means to achieve super-resolution infrared imaging using distributed platforms. We demonstrated that the JEFP approach achieves pixel super-resolution with high efficiency, without requiring subsystems to perform mechanical scanning in space or to have high position accuracy. Our JEFP approach extends the application scope of Fourier ptychographic imaging, especially in distributed platforms for planetary exploration applications.