Mikhail I. Popchenko

Mikhail I. Popchenko


Research Focus & Metrics

Academic Career Length

4Years (2023-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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Maxim KovalevMaxim Kovalev
Maxim Kovalev
NGNatalya Stanislavovna Gladysh
Natalya Stanislavovna Gladysh
ABAlina S. Bogdanova
Alina S. Bogdanova
NBNadezhda L. Bolsheva
Nadezhda L. Bolsheva
MPMikhail I. Popchenko
Mikhail I. Popchenko
AKAnna Kudryavtseva
Anna Kudryavtseva
Poplar (Populus) is a genus of woody plants of great economic value. Due to the growing economic importance of poplar, there is a need to ensure its stable growth by increasing its resistance to pathogens. Genetic engineering can create organisms with improved traits faster than traditional methods, and with the development of CRISPR/Cas-based genome editing systems, scientists have a new highly effective tool for creating valuable genotypes. In this review, we summarize the latest research data on poplar diseases, the biology of their pathogens and how these plants resist pathogens. In the final section, we propose to plant male or mixed poplar populations; consider the genes of the MLO group, transcription factors of the WRKY and MYB families and defensive proteins BbChit1, LJAMP2, MsrA2 and PtDef as the most promising targets for genetic engineering; and also pay attention to the possibility of microbiome engineering.

1 December 2024 in BioTech
Verified
Journal Article
Open access
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MPMikhail I. Popchenko
Mikhail I. Popchenko
Dmitry KarpovDmitry Karpov
Dmitry Karpov
NGNatalya Stanislavovna Gladysh
Natalya Stanislavovna Gladysh
Maxim KovalevMaxim Kovalev
Maxim Kovalev
VVVsevolod V Volodin
Vsevolod V Volodin
AKAnna Kudryavtseva
Anna Kudryavtseva
The white poplar (Populus alba) is a dioecious woody plant with significant potential for the phytoremediation of soils. To realize this potential, it is necessary to utilize growth-promoting microorganisms. One potential source of such beneficial microorganisms is the rhizosphere community of wild-growing trees. However, the structure, dynamics, and metabolism of the rhizosphere community of wild-growing white poplar remain poorly understood. To ascertain seasonal dynamics, species diversity, and metabolic potential, we sequenced 16S rRNA genes in metagenomes derived from 165 soil samples collected in spring and autumn from the root surfaces of 102 trees situated in disparate geographical locations. The three most prevalent phyla across all samples are Proteobacteria, Actinobacteriota, and Acidobacteriota. At the order level, the most prevalent orders are Sphingomonadales and Rhizobiales. Accordingly, the families Sphingomonadaceae and Rhizobiaceae were identified as dominant. The rhizospheric microbiome exhibited substantial inter-seasonal variation. Six families, including Caulobacteraceae, Xanthomonadaceae, Chitinophagaceae, Chthoniobacteraceae, Sphingomonadaceae, and Rhizobiaceae, exhibited alterations (spring-to-autumn) across all geographical locations under study. Members of the Rhizobiaceae family, which includes nitrogen-fixing bacteria, can provide poplar with plant-available forms of nitrogen such as nitrate and ammonium. The rhizosphere microbiome may facilitate the conversion of inorganic sulfur into sulfur-containing amino acids, cysteine and methionine, that are bioavailable to plants. Furthermore, the rhizosphere microbiome is capable of synthesizing amino acids, organic acids (including Krebs cycle acids), and some lipids and sugars. Consequently, the rhizosphere community can stimulate poplar growth by providing it with readily available forms of nitrogen and sulfur, as well as building blocks for the synthesis of proteins, nucleic acids, and other macromolecules. Many of these pathways, including nitrogen fixation, were subjected to seasonal changes.

1 November 2024 in Preprints.org
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Preprint
Open access
PDF file
NGNatalya Stanislavovna Gladysh
Natalya Stanislavovna Gladysh
MPMikhail I. Popchenko
Mikhail I. Popchenko
Maxim KovalevMaxim Kovalev
Maxim Kovalev
VVVsevolod V Volodin
Vsevolod V Volodin
GKGeorge S. Krasnov
George S. Krasnov
AKAnna Kudryavtseva
Anna Kudryavtseva
The white poplar (Populus alba L.) is an economically significant tree species with a natural distribution spanning extensive region of Eurasia. Nevertheless, there is currently no hypothesis regarding the historical shaping of this range. In this study, we collected and sequenced 36 individuals of white poplar from disparate regions of Russia and Kazakhstan. Additionally, we employed available genomic data of white poplars from Italy, Hungary, and China. A genomic approach was employed to collate data on the location of glaciers in different periods, along with information on the natural and artificial distribution of white poplar. This enabled the formulation of the first hypothesis regarding the formation of the modern range of this plant. It is hypothesized that during the period of maximum glaciation, three refugia existed: the South European, Transcaucasian, and Altai-Middle Asian refugia. Post-glacial migration from these refugia led to the formation of modern populations of P. alba in Eastern Europe (including the European part of Russia), the Caucasus, and Siberia, respectively.

15 December 2023 in Preprints.org
Verified
Preprint
Open access
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Maxim KovalevMaxim Kovalev
Maxim Kovalev
NGNatalya Stanislavovna Gladysh
Natalya Stanislavovna Gladysh
ABAlina S. Bogdanova
Alina S. Bogdanova
NBNadezhda L. Bolsheva
Nadezhda L. Bolsheva
MPMikhail I. Popchenko
Mikhail I. Popchenko
AKAnna Kudryavtseva
Anna Kudryavtseva
Poplar (Populus) is a genus of woody plants of value for the pulp industry, green energy, urban landscaping, soil phytoremediation and as an ornamental plant. Due to the increasing economic importance of poplar, there is a need to ensure its stable growth by increasing its resistance to pathogens, as one of the main problems in poplar cultivation is its susceptibility to numerous diseases. Currently, breeding poplars with reduced susceptibility to infections is receiving increasing attention. Genetic engineering can produce organisms with improved traits faster than traditional methods, and with the development of CRISPR/Cas-based genome editing systems, scientists have a new highly efficient tool at their disposal to create valuable genotypes. In this review, we summarize recent research data on poplar diseases, the biology of their pathogens, and how these plants resist pathogens. In the final section, we discuss genetic engineering, genome editing, and microbiome strategies that we believe are suitable for obtaining new improved poplar lines.