Hong-Feng Chen

Dr. Hong-Feng Chen


Research Focus & Metrics

Academic Career Length

24Years (2003-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
11 October 2024 in Science
Verified
Journal Article
Closed access
TKTae Gun Kang
Tae Gun Kang
XLXin Lan
Xin Lan
TMTian Mi
Tian Mi
HCHongfeng Chen
Hongfeng Chen
SAShanta Alli
Shanta Alli
CZCaitlin C. Zebley
Caitlin C. Zebley
Epigenetic reinforcement of T cell exhaustion is known to be a major barrier limiting T cell responses during immunotherapy. However, the core epigenetic regulators restricting antitumor immunity during prolonged antigen exposure are not clear. We investigated three commonly mutated epigenetic regulators that promote clonal hematopoiesis to determine whether they affect T cell stemness and response to checkpoint blockade immunotherapy. CD8 T cells lacking Dnmt3a, Tet2, or Asxl1 preserved a progenitor-exhausted (Tpex) population for more than 1 year during chronic antigen exposure without undergoing malignant transformation. Asxl1 controlled the self-renewal capacity of T cells and reduced CD8 T cell differentiation through H2AK119 ubiquitination and epigenetic modification of the polycomb group–repressive deubiquitinase pathway. Asxl1-deficient T cells synergized with anti–PD-L1 immunotherapy to improve tumor control in experimental models and conferred a survival advantage to mutated T cells from treated patients.

1 October 2021 in Molecular Phylogenetics and Evolution
Verified
Journal Article
Closed access
LDLei Duan
Lei Duan
SLShi-Jin Li
Shi-Jin Li
CSChun Su
Chun Su
YSYotsawate Sirichamorn
Yotsawate Sirichamorn
LHLi-Na Han
Li-Na Han
HCHong-Feng Chen
Hong-Feng Chen

11 October 2018 in BMC Plant Biology
Verified
Journal Article
Open access
PDF file
CYChao Yang
Chao Yang
WSWenjin Shen
Wenjin Shen
HCHong-Feng Chen
Hong-Feng Chen
LCLiutian Chu
Liutian Chu
XYXu Yingchao
Xu Yingchao
MLMing Luo
Ming Luo
Histone deacetylases (HDACs) function as key epigenetic factors in repressing the expression of genes in multiple aspects of plant growth, development and plant response to abiotic or biotic stresses. To date, the molecular function of HDACs is well described in Arabidopsis thaliana, but no systematic analysis of this gene family in soybean (Glycine max) has been reported. In this study, 28 HDAC genes from soybean genome were identified, which were asymmetrically distributed on 12 chromosomes. Phylogenetic analysis demonstrated that GmHDACs fall into three major groups previously named RPD3/HDA1, SIR2, and HD2. Subcellular localization analysis revealed that YFP-tagged GmSRT4, GmHDT2 and GmHDT4 were predominantly localized in the nucleus, whereas GmHDA6, GmHDA13, GmHDA14 and GmHDA16 were found in both the cytoplasm and nucleus. Real-time quantitative PCR showed that GmHDA6, GmHDA13, GmHDA14, GmHDA16 and GmHDT4 were broadly expressed across plant tissues, while GmHDA8, GmSRT2, GmSRT4 and GmHDT2 showed differential expression across various tissues. Interestingly, we measured differential changes in GmHDACs transcripts accumulation in response to several abiotic cues, indicating that these epigenetic modifiers could potentially be part of a dynamic transcriptional response to stress in soybean. Finally, we show that the levels of histone marks previously reported to be associated with plant HDACs are modulated by cold and heat in this legume. We have identified and classified 28 HDAC genes in soybean. Our data provides insights into the evolution of the HDAC gene family and further support the hypothesis that these genes are important for the plant responses to environmental stress.

FSFeng Su
Feng Su
ZLZhian Li
Zhian Li
YLYingwen Li
Yingwen Li
LXLei Xu
Lei Xu
YLYongxing Li
Yongxing Li
FWFa-Guo Wang
Fa-Guo Wang
Phytoremediation is a potentially suitable technology for taking up large amounts of N and P during plant growth and the removal of plant material, thereby avoiding eutrophication. We compared the capacity of nine different aquatic plant species for removing total P (TP), total N (TN), and NH4+-N from raw domestic sewage wastewater collected from a living area located in Guangzhou city, China, and different concentrations of artificial wastewater. The experiments were performed in two stages, namely screening and modification. In the screening stage, four plant species were identified from the nine grown in raw domestic sewage water for 36 days. In the modification stage, the TN and TP removal ability of different plant combinations were determined in artificial wastewater at different N/P concentrations. After having been grown in monocultures for 46 days, Ipomoea aquatica (90.6% and 8.8%) and Salvinia natans (67.3% and 14.2%) obtained the highest TP removal efficiency in lightly and highly polluted wastewater, respectively. The combination of S. natans and Eleocharis plantagineiformis effectively removed TP and TN from lightly polluted water, suggesting that this combination is suitable for phytoremediation of eutrophic wastewater.

1 November 2023 in Science China Life Sciences
Verified
Journal Article
Closed access
PDF file
Lei DuanLei Duan
Lei Duan
LFLin Fu
Lin Fu
HCHong-Feng Chen
Hong-Feng Chen

5 February 2015 in BMC Plant Biology
Verified
Journal Article
Open access
PDF file
AWAi-Hua Wang
Ai-Hua Wang
YSYe Sun
Ye Sun
HLHongmei Liu
Hongmei Liu
JZJun-Wen Zhai
Jun-Wen Zhai
DLDong-Ming Liu
Dong-Ming Liu
FWFa-Guo Wang
Fa-Guo Wang
There are different opinions about the relationship of two disjunctively distributed varieties Adiantum reniforme L. var. sinense Y.X.Lin and Adiantum reniforme L. Adiantum reniforme var. sinense is an endangered fern only distributed in a narrowed region of Chongqing city in China, while Adiantum reniforme var. reniforme just distributed in Canary Islands and Madeira off the north-western African coast. To verify the relationship of these two taxa, relative phylogenetic analyses, karyotype analyses, microscopic spore observations and morphological studies were performed in this study. Besides, divergence time between A. reniforme var. sinense and A. reniforme var. reniforme was estimated using GTR model according to a phylogeny tree constructed with the three cpDNA markers atpA, atpB, and rbcL. Phylogenetic results and divergence time analyses--all individuals of A. reniforme var. sinense from 4 different populations (representing all biogeographic distributions) were clustered into one clade and all individuals of A. reniforme var. reniforme from 7 different populations (all biogeographic distributions are included) were clustered into another clade. The divergence between A. reniforme var. reniforme and A. reniforme var. sinense was estimated to be 4.94 (2.26-8.66) Myr. Based on karyotype analyses, A. reniforme var. reniforme was deduced to be hexaploidy with 2n = 180, X = 30, while A. reniforme var. sinense was known as tetraploidy. Microscopic spore observations suggested that surface ornamentation of A. reniforme var. reniforme is psilate, but that of A. reniforme var. sinense is rugate. Leaf blades of A. reniforme var. sinense are membranous and reniform and with several obvious concentric rings, and leaves of A. reniforme var. reniforme are pachyphyllous and coriaceous and are much rounder and similar to palm. Adiantum reniforme var. sinense is an independent species rather than the variety of Adiantum reniforme var. reniforme. As a result, we approve Adiantum nelumboides X. C. Zhang, nom. & stat. nov. as a legal name instead of the former Adiantum reniforme var. sinense. China was determined to be the most probable evolution centre based on the results of phylogenetic analyses, divergence estimation, relative palaeogeography and palaeoclimate materials.