Olga Ikkert

Dr. Olga Ikkert

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Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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13 July 2021 in International Journal of Systematic and Evolutionary Microbiology
Verified
Journal Article
Open access
IPInna A. Panova
Inna A. Panova
OIOlga Ikkert
Olga Ikkert
MAMarat R. Avakyan
Marat R. Avakyan
Dmitry KopitsynDmitry Kopitsyn
Dmitry Kopitsyn
AMAndrey Mardanov
Andrey Mardanov
OKOlga Karnachuk
Olga Karnachuk
A novel, spore-forming, acidophilic and metal-resistant sulfate-reducing bacterium, strain OLT, was isolated from a microbial mat in a tailing dam at a gold ore mining site. Cells were slightly curved immotile rods, 0.5 µm in diameter and 2.0–3.0 µm long. Cells were stained Gram-negative, despite the Gram-positive cell structure revealed by electron microscopy of ultrathin layers. OLT grew at pH 4.0–7.0 with an optimum at 5.5. OLT utilised H2, lactate, pyruvate, malate, formate, propionate, ethanol, glycerol, glucose, fructose, sucrose, peptone and tryptone as electron donors for sulfate reduction. Sulfate, sulfite, thiosulfate, nitrate and fumarate were used as electron acceptors in the presence of lactate. Elemental sulfur, iron (III), and arsenate did not serve as electron acceptors. The major cellular fatty acids were C16:1ω7c (39.0 %) and C16 : 0 (12.1 %). The draft genome of OLT was 5.29 Mb in size and contained 4909 protein-coding genes. The 16S rRNA gene sequence placed OLT within the phylum Firmicutes , class Clostridia , family Peptococcaceae , genus Desulfosporosinus. Desulfosporosinus nitroreducens 59.4BT was the closest relative with 97.6 % sequence similarity. On the basis of phenotypic and phylogenetic characteristics, strain OLT represents a novel species within the genus Desulfosporosinus , for which we propose the name Desulfosporosinus metallidurans sp. nov. with the type strain OLT (=DSM 104464T=VKM В−3021T).

10 December 2021 in Microorganisms
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Journal Article
Open access
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OKOlga Karnachuk
Olga Karnachuk
OIOlga Ikkert
Olga Ikkert
MAMarat R. Avakyan
Marat R. Avakyan
YKYu. V. Knyazev
Yu. V. Knyazev
MNMikhail N.Volochaev
Mikhail N.Volochaev
Nikolai RavinNikolai Ravin
Nikolai Ravin
The sulphate-reducing bacteria (SRB) of genus Desulfovibrio are a group of prokaryotes associated with autism spectrum disorders (ASD). The connection between the elevated numbers of Desulfovibrio in the gut of children with ASD compared with healthy children remains unresolved. A conceivable consequence of SRB overgrowth in the gut is the conversion of bioavailable iron into low-soluble crystalline iron sulphides, causing iron deficiency in the organism. In this study, we report the draft genome sequence and physiological features of the first cultivable isolate from a patient with ASD, Desulfovibrio desulfuricans strain AY5.The capability of the strain to produce crystalline iron sulphides was studied under different pH conditions. The most notable greigite(Fe3S4) and pyrite (FeS2) formation was revealed at pH 6.0, which suggests that the iron loss due to insoluble sulphide formation may occur in the proximal part of the gastrointestinal tract. Strain AY5 was adapted to grow under nitrogen-limiting conditions by N2 fixation. The urease found in the strain’s genome may play a role in resistance to acidic pH.

1 July 2020 in Microbiology
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Journal Article
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LSL. O. Sokolyanskaya
L. O. Sokolyanskaya
MIMaxim Ivanov
Maxim Ivanov
OIOlga Ikkert
Olga Ikkert
AKA. E. Kalinina
A. E. Kalinina
VEV. A. Evseev
V. A. Evseev
OKOlga Karnachuk
Olga Karnachuk
Micromycetes can precipitate metals in the form of insoluble oxalates, thus participating in metal removal from geochemical cycling and in secondary mineral formation. Metal precipitation has a practical application for bioleaching and bioremediation. Micromycetes from the genus Aspergillus are used as model organisms to study metal precipitation. All known biomineralization processes carried out by micromycetes described so far involved mesophilic organisms. Thermophilic eukaryotes may be advantageous for biotechnologies. This study reports the isolation of thermophilic/thermotolerant Aspergillus spp. from burning wastes of coal mining in Kuzbass and their participation in formation of insoluble copper oxalate, moolooite. Copper-enriched extracellular vesicles formed in the process may act as nucleation sites for the moolooite crystals formation.

23 January 2025 in Inorganics
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Journal Article
Open access
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Mikhail PLATUNOVMikhail PLATUNOV
Mikhail PLATUNOV
YKYu. V. Knyazev
Yu. V. Knyazev
OIOlga Ikkert
Olga Ikkert
OKOlga Karnachuk
Olga Karnachuk
ANAnton D. Nikolenko
Anton D. Nikolenko
Andrey A. DubrovskiyAndrey A. Dubrovskiy
Andrey A. Dubrovskiy
This study explores the phase composition, local atomic structure, and magnetic properties of biogenic nanomaterials synthesized through microbially mediated biomineralization by the sulfate-reducing bacterium Desulfovibrio species strain A2 (Cupidesulfovibrio). Using X-ray diffraction (XRD), transmission electron microscopy (TEM), Mössbauer spectroscopy, X-ray absorption near-edge structure (XANES) spectroscopy, extended X-ray absorption fine structure (EXAFS) spectroscopy, and magnetic measurements, we identified a mixture of vivianite (Fe3(PO4)2·8H2O) and sulfur-containing crystalline phases (α-sulfur). XRD analysis confirmed that the vivianite phase, with a monoclinic I2/m structure, constitutes 44% of the sample, while sulfur-containing phases (α-sulfur, Fddd) account for 56%, likely as a result of bacterial sulfate-reducing activity. X-ray absorption spectroscopy (XAS) and EXAFS revealed the presence of multiple sulfur oxidation states, including elemental sulfur and sulfate (S6+), underscoring the role of sulfur in the sample’s structure. Mössbauer spectroscopy identified the presence of ferrihydrite nanoparticles with a blocking temperature of approximately 45 K. Magnetic measurements revealed significant coercivity (~2 kOe) at 4.2 K, attributed to the blocked ferrihydrite nanoparticles. The results provide new insights into the structural and magnetic properties of these microbially mediated biogenic nanomaterials, highlighting their potential applications in magnetic-based technologies.